miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 75406 0.66 0.92289
Target:  5'- cGUCU---GCGCGGcCGCGGGcAguguacggcGGGCCg -3'
miRNA:   3'- uCAGAuucCGCGCC-GCGUUC-U---------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 35491 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 154518 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 149431 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30404 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 8252 0.66 0.919542
Target:  5'- uAGUCU--GGCcaGCGGCGCccuGGuguccgccucguugcAGGCCg -3'
miRNA:   3'- -UCAGAuuCCG--CGCCGCGuu-CU---------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 107203 0.66 0.917262
Target:  5'- --aCUaAAGGCgGCGGCGCGcgcGGuuGGCa -3'
miRNA:   3'- ucaGA-UUCCG-CGCCGCGU---UCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 116426 0.66 0.917262
Target:  5'- aGGUCgcugGGGGCGUcuGGcCGCGGGGgcgacgaucgGGGCg -3'
miRNA:   3'- -UCAGa---UUCCGCG--CC-GCGUUCU----------UCCGg -5'
24689 3' -55.8 NC_005264.1 + 162688 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 43662 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 36095 0.66 0.917262
Target:  5'- -cUCUucGGCGCGGCugGCAGauGGGUa -3'
miRNA:   3'- ucAGAuuCCGCGCCG--CGUUcuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 69606 0.66 0.917262
Target:  5'- ----gAGGGCGCcgcccGGCGUGAGAacgacAGGCUa -3'
miRNA:   3'- ucagaUUCCGCG-----CCGCGUUCU-----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 88112 0.66 0.911394
Target:  5'- cGUCggccGGCGCGGuUGCGuacgggcuGAuGGCCg -3'
miRNA:   3'- uCAGauu-CCGCGCC-GCGUu-------CUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 125148 0.66 0.911394
Target:  5'- cGUCcaucAGGUGCGGgaGgGcGAGGGCCg -3'
miRNA:   3'- uCAGau--UCCGCGCCg-CgUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 97101 0.66 0.911394
Target:  5'- cGGUCguuaacGGC-CaGCGCGAGuuGGCCu -3'
miRNA:   3'- -UCAGauu---CCGcGcCGCGUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 98530 0.66 0.911394
Target:  5'- cAGUCUu-GGCaGCGGCaacGCGcuguGGGCCg -3'
miRNA:   3'- -UCAGAuuCCG-CGCCG---CGUucu-UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6121 0.66 0.911394
Target:  5'- cGUCcaucAGGUGCGGgaGgGcGAGGGCCg -3'
miRNA:   3'- uCAGau--UCCGCGCCg-CgUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13615 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 132642 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 96879 0.66 0.910192
Target:  5'- gAGUauugaagauGGCaugGCGGCGCGcGAGGGCg -3'
miRNA:   3'- -UCAgauu-----CCG---CGCCGCGUuCUUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.