miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 13615 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 98530 0.66 0.911394
Target:  5'- cAGUCUu-GGCaGCGGCaacGCGcuguGGGCCg -3'
miRNA:   3'- -UCAGAuuCCG-CGCCG---CGUucu-UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 43662 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30404 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 35491 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 128309 0.66 0.898948
Target:  5'- -uUCUGGGGCaGUuuGGUGCGGucGAAGGCg -3'
miRNA:   3'- ucAGAUUCCG-CG--CCGCGUU--CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 121055 0.66 0.898948
Target:  5'- gGGUUUuuGGCGaGGCagGCuuucauGAAGGCCg -3'
miRNA:   3'- -UCAGAuuCCGCgCCG--CGuu----CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 31467 0.66 0.898948
Target:  5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3'
miRNA:   3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 97101 0.66 0.911394
Target:  5'- cGGUCguuaacGGC-CaGCGCGAGuuGGCCu -3'
miRNA:   3'- -UCAGauu---CCGcGcCGCGUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 75406 0.66 0.92289
Target:  5'- cGUCU---GCGCGGcCGCGGGcAguguacggcGGGCCg -3'
miRNA:   3'- uCAGAuucCGCGCC-GCGUUC-U---------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 104323 0.66 0.898948
Target:  5'- --cUUGAGGCGCGaCGCcgcuuacgAGGAGGuGCCg -3'
miRNA:   3'- ucaGAUUCCGCGCcGCG--------UUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 146910 0.67 0.859256
Target:  5'- gGGUCUAcugggugggcuaucgGGGCaguaguucGUGGCGCA--GAGGCUg -3'
miRNA:   3'- -UCAGAU---------------UCCG--------CGCCGCGUucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30849 0.67 0.892375
Target:  5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3'
miRNA:   3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 8785 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 48893 0.67 0.877831
Target:  5'- cGUCcGAGaaGCGGCacGCGgaaaauuGGAAGGCCa -3'
miRNA:   3'- uCAGaUUCcgCGCCG--CGU-------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 155244 0.67 0.868338
Target:  5'- gGGggaUGAGGaagcaucuccgcaGCGGCGCGGGGuAGGCg -3'
miRNA:   3'- -UCag-AUUCCg------------CGCCGCGUUCU-UCCGg -5'
24689 3' -55.8 NC_005264.1 + 83241 0.67 0.863835
Target:  5'- cGUCUAGGccgccgcugauGCGCuGGCGCGGcGAAcuucaauuucGGCCg -3'
miRNA:   3'- uCAGAUUC-----------CGCG-CCGCGUU-CUU----------CCGG- -5'
24689 3' -55.8 NC_005264.1 + 29625 0.67 0.863835
Target:  5'- aAGcUCUAcGGCGCGGaCGaac-GAGGCCc -3'
miRNA:   3'- -UC-AGAUuCCGCGCC-GCguucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 94401 0.67 0.863835
Target:  5'- cGUCUAugaucAGGcCGCGGCGCcGGuAGuCCa -3'
miRNA:   3'- uCAGAU-----UCC-GCGCCGCGuUCuUCcGG- -5'
24689 3' -55.8 NC_005264.1 + 4446 0.67 0.863835
Target:  5'- cGUCUGAGGCcucugGCuGCGCGAuucuGGGCg -3'
miRNA:   3'- uCAGAUUCCG-----CGcCGCGUUcu--UCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.