miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 118204 1.12 0.001771
Target:  5'- cAGUCUAAGGCGCGGCGCAAGAAGGCCa -3'
miRNA:   3'- -UCAGAUUCCGCGCCGCGUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 140540 0.81 0.223266
Target:  5'- uGUCUGAGGCGCGGCugggaugGC-AGAAGGgCg -3'
miRNA:   3'- uCAGAUUCCGCGCCG-------CGuUCUUCCgG- -5'
24689 3' -55.8 NC_005264.1 + 121912 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 2886 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 102103 0.79 0.27792
Target:  5'- gAGUCUGAGGacggcugGCGGCGguAcGAGGCCg -3'
miRNA:   3'- -UCAGAUUCCg------CGCCGCguUcUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 152983 0.78 0.305132
Target:  5'- cGGUCUccGGCGCGG-GCGAGGAGGa- -3'
miRNA:   3'- -UCAGAuuCCGCGCCgCGUUCUUCCgg -5'
24689 3' -55.8 NC_005264.1 + 117506 0.78 0.319486
Target:  5'- cGUCUcGGGCGCGGCGCGucugcGGUCg -3'
miRNA:   3'- uCAGAuUCCGCGCCGCGUucuu-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 44903 0.77 0.334341
Target:  5'- cGUCUGGGGCGggaggagagaucCGGCGCAAGcgaaccgcGGGCCc -3'
miRNA:   3'- uCAGAUUCCGC------------GCCGCGUUCu-------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 24195 0.77 0.349695
Target:  5'- aAGUCU--GGCGCGGUGCcGGu-GGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGCCGCGuUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 128536 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 9509 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 136431 0.76 0.415986
Target:  5'- uAGUCUGAGGCGgaagagcaugGGCGCu--GAGGCCg -3'
miRNA:   3'- -UCAGAUUCCGCg---------CCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 12431 0.75 0.45189
Target:  5'- cGUgCUugGAGGCGCGGUGCGGucuaAAGGCCc -3'
miRNA:   3'- uCA-GA--UUCCGCGCCGCGUUc---UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 131458 0.75 0.45189
Target:  5'- cGUgCUugGAGGCGCGGUGCGGucuaAAGGCCc -3'
miRNA:   3'- uCA-GA--UUCCGCGCCGCGUUc---UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 17268 0.75 0.461128
Target:  5'- cGGUCgucaacgGAGGCGaCGGgGCG-GAGGGCUg -3'
miRNA:   3'- -UCAGa------UUCCGC-GCCgCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 53094 0.74 0.478951
Target:  5'- uGUCUAagcugguggacaAGGCGCucGGCGagggggcCGAGGAGGCCg -3'
miRNA:   3'- uCAGAU------------UCCGCG--CCGC-------GUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 125508 0.74 0.489422
Target:  5'- cGUCgGGGuGCGCGGC-CAucGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCGCCGcGUu-CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6481 0.74 0.489422
Target:  5'- cGUCgGGGuGCGCGGC-CAucGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCGCCGcGUu-CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 138329 0.74 0.508728
Target:  5'- uGGUCau-GGCGCGuGCGCGAcAAGGCg -3'
miRNA:   3'- -UCAGauuCCGCGC-CGCGUUcUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 36515 0.74 0.528347
Target:  5'- cGGcCUcgacGAGGCG-GGCGCAGGAGccaucGGCCg -3'
miRNA:   3'- -UCaGA----UUCCGCgCCGCGUUCUU-----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.