miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 22319 0.73 0.548241
Target:  5'- uAGUCUGGcGCGCGGgGCAauGGGucuGGGCUa -3'
miRNA:   3'- -UCAGAUUcCGCGCCgCGU--UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 123388 0.73 0.568362
Target:  5'- uGUUgGAGGCGUGGUGCGAGAugcagaaccGCCa -3'
miRNA:   3'- uCAGaUUCCGCGCCGCGUUCUuc-------CGG- -5'
24689 3' -55.8 NC_005264.1 + 83186 0.73 0.57545
Target:  5'- uGUCagcggcAGGCGCGGCGCGAacuaugcgcuuuuauGGGCCg -3'
miRNA:   3'- uCAGau----UCCGCGCCGCGUUcu-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 80191 0.73 0.578494
Target:  5'- cGGUCUugaaaggaGAGGCGCGGgacgugUGUGAGAagcuuGGGCCg -3'
miRNA:   3'- -UCAGA--------UUCCGCGCC------GCGUUCU-----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 158052 0.72 0.588664
Target:  5'- gAGUCggugGAGGUGCGcgaacggcgccGCGC-AGAAGGCg -3'
miRNA:   3'- -UCAGa---UUCCGCGC-----------CGCGuUCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 127919 0.72 0.609092
Target:  5'- --cCUGAGGCG-GGCGCcacuGGGCCa -3'
miRNA:   3'- ucaGAUUCCGCgCCGCGuucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 26122 0.72 0.609092
Target:  5'- cGGcUCgu-GGCGCGGCGCcgaGAGAAuGGCg -3'
miRNA:   3'- -UC-AGauuCCGCGCCGCG---UUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 51645 0.72 0.619336
Target:  5'- gAG-CUGAGGU--GGUGCAuGAAGGCCa -3'
miRNA:   3'- -UCaGAUUCCGcgCCGCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 19389 0.72 0.629589
Target:  5'- cGUUUGGGGCGCauuGGCGaCAugauggGGGAGGCg -3'
miRNA:   3'- uCAGAUUCCGCG---CCGC-GU------UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 69662 0.71 0.660329
Target:  5'- aGGUC--GGGCacGCGGCGCu--GGGGCCu -3'
miRNA:   3'- -UCAGauUCCG--CGCCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 50559 0.71 0.660329
Target:  5'- aAG-CUAGGcGCGCGcGUGCGGGAAGcGCa -3'
miRNA:   3'- -UCaGAUUC-CGCGC-CGCGUUCUUC-CGg -5'
24689 3' -55.8 NC_005264.1 + 17410 0.71 0.660329
Target:  5'- ----aGAGGUGCGGCGUGAcGucuAGGCCu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUU-Cu--UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 5958 0.71 0.680722
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcuGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU--UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 73597 0.71 0.690863
Target:  5'- aAGUUUGGGGUGgGGcCGCAGGccugcuGGGCg -3'
miRNA:   3'- -UCAGAUUCCGCgCC-GCGUUCu-----UCCGg -5'
24689 3' -55.8 NC_005264.1 + 54261 0.7 0.700954
Target:  5'- uGUCgaguGGGaGCGGgGCGAGGAccauGGCCa -3'
miRNA:   3'- uCAGau--UCCgCGCCgCGUUCUU----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 73451 0.7 0.710988
Target:  5'- cAGUCUGcccuuGGCcuagcCGGCGCuugccgucAGGAAGGCCc -3'
miRNA:   3'- -UCAGAUu----CCGc----GCCGCG--------UUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6734 0.7 0.710988
Target:  5'- cGGUaCUccgcGGCGUGGCGCGGGAAGuGUUc -3'
miRNA:   3'- -UCA-GAuu--CCGCGCCGCGUUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 74702 0.7 0.717972
Target:  5'- uAGUCaacgacuugUAGGGCGCGGCGCGcGAaacugucuccugcuAGGUUu -3'
miRNA:   3'- -UCAG---------AUUCCGCGCCGCGUuCU--------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 97793 0.7 0.720954
Target:  5'- ------cGGCGCGGCGUAAuGAguAGGCUg -3'
miRNA:   3'- ucagauuCCGCGCCGCGUU-CU--UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 93484 0.7 0.720954
Target:  5'- uGUCUGAGGCGCuGCu---GgcGGCCg -3'
miRNA:   3'- uCAGAUUCCGCGcCGcguuCuuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.