miRNA display CGI


Results 41 - 60 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 93484 0.7 0.720954
Target:  5'- uGUCUGAGGCGCuGCu---GgcGGCCg -3'
miRNA:   3'- uCAGAUUCCGCGcCGcguuCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 19966 0.7 0.740648
Target:  5'- ----aAAGGCGCGGCGCGAGucGacGCa -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUUCuuC--CGg -5'
24689 3' -55.8 NC_005264.1 + 97530 0.7 0.740648
Target:  5'- cGG-CUGuGGCGUGGCaGCGGGcAAGaGCCa -3'
miRNA:   3'- -UCaGAUuCCGCGCCG-CGUUC-UUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 29470 0.7 0.750356
Target:  5'- cGGaUUGGGGgGCGGUGCAGcGcAGGGCUa -3'
miRNA:   3'- -UCaGAUUCCgCGCCGCGUU-C-UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 113257 0.7 0.750356
Target:  5'- uGGUCgccGGCgGCGuGCGcCGAGAAGGUg -3'
miRNA:   3'- -UCAGauuCCG-CGC-CGC-GUUCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 91555 0.69 0.759961
Target:  5'- -aUC--GGGCGCGGCGgGGGGcacgAGGCUu -3'
miRNA:   3'- ucAGauUCCGCGCCGCgUUCU----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22004 0.69 0.759961
Target:  5'- ----aAAGGCGCGGCGCGu--AGGUUu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 18175 0.69 0.769452
Target:  5'- cGG-CUGAcGCuCGGCGCAAGAAuGCCg -3'
miRNA:   3'- -UCaGAUUcCGcGCCGCGUUCUUcCGG- -5'
24689 3' -55.8 NC_005264.1 + 132582 0.69 0.778819
Target:  5'- ----aGAGGagaGCGGCGCGGGcGGGaCCg -3'
miRNA:   3'- ucagaUUCCg--CGCCGCGUUCuUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 2597 0.69 0.778819
Target:  5'- aGGUCUccaaaggagAAGGCGCGaGC-CGAGcAGGCg -3'
miRNA:   3'- -UCAGA---------UUCCGCGC-CGcGUUCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 36237 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 149240 0.69 0.778819
Target:  5'- uGUCgcuggccGGUGUGGCGCu--GGGGCCg -3'
miRNA:   3'- uCAGauu----CCGCGCCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13555 0.69 0.778819
Target:  5'- ----aGAGGagaGCGGCGCGGGcGGGaCCg -3'
miRNA:   3'- ucagaUUCCg--CGCCGCGUUCuUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 162816 0.69 0.778819
Target:  5'- cAG-CUAGGGcCGCGGCGUuauGgcGuGCCg -3'
miRNA:   3'- -UCaGAUUCC-GCGCCGCGuu-CuuC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 121624 0.69 0.778819
Target:  5'- aGGUCUccaaaggagAAGGCGCGaGC-CGAGcAGGCg -3'
miRNA:   3'- -UCAGA---------UUCCGCGC-CGcGUUCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 155264 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 40950 0.69 0.785299
Target:  5'- cGGUCgaucgcagccgcagcGGGCGaCGGCGCGAGcgcgaccGGCCc -3'
miRNA:   3'- -UCAGau-------------UCCGC-GCCGCGUUCuu-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 159977 0.69 0.785299
Target:  5'- cGGUCgaucgcagccgcagcGGGCGaCGGCGCGAGcgcgaccGGCCc -3'
miRNA:   3'- -UCAGau-------------UCCGC-GCCGCGUUCuu-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 42942 0.69 0.788055
Target:  5'- cAGUCguacguccGGGCGCGGCaacgccucggaGgGGGAAaGGCCg -3'
miRNA:   3'- -UCAGau------UCCGCGCCG-----------CgUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 4490 0.69 0.788055
Target:  5'- cGUCaaGGGGCGCGGUGC-----GGCCg -3'
miRNA:   3'- uCAGa-UUCCGCGCCGCGuucuuCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.