Results 21 - 40 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24689 | 3' | -55.8 | NC_005264.1 | + | 37387 | 0.66 | 0.905289 |
Target: 5'- ----cAGGGCGCGGC---AGAGGGaCCg -3' miRNA: 3'- ucagaUUCCGCGCCGcguUCUUCC-GG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 54408 | 0.66 | 0.905289 |
Target: 5'- aAGUCguuguuGCGCGGCGCGccGAcuaGGGCg -3' miRNA: 3'- -UCAGauuc--CGCGCCGCGUu-CU---UCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 103702 | 0.66 | 0.905289 |
Target: 5'- aAGUUgAGGGCcaguggagcgGCGGCGCGGcaucagcggcGgcGGCCg -3' miRNA: 3'- -UCAGaUUCCG----------CGCCGCGUU----------CuuCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 35893 | 0.66 | 0.898948 |
Target: 5'- -uUCUuGGGCGUGGUGuCGGGGucgcuGGCUc -3' miRNA: 3'- ucAGAuUCCGCGCCGC-GUUCUu----CCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 80166 | 0.66 | 0.898948 |
Target: 5'- uGUCaccGGGCuCGGCGC--GAAGGCg -3' miRNA: 3'- uCAGau-UCCGcGCCGCGuuCUUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 150494 | 0.66 | 0.898948 |
Target: 5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3' miRNA: 3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 104323 | 0.66 | 0.898948 |
Target: 5'- --cUUGAGGCGCGaCGCcgcuuacgAGGAGGuGCCg -3' miRNA: 3'- ucaGAUUCCGCGCcGCG--------UUCUUC-CGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 128309 | 0.66 | 0.898948 |
Target: 5'- -uUCUGGGGCaGUuuGGUGCGGucGAAGGCg -3' miRNA: 3'- ucAGAUUCCG-CG--CCGCGUU--CUUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 121055 | 0.66 | 0.898948 |
Target: 5'- gGGUUUuuGGCGaGGCagGCuuucauGAAGGCCg -3' miRNA: 3'- -UCAGAuuCCGCgCCG--CGuu----CUUCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 31467 | 0.66 | 0.898948 |
Target: 5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3' miRNA: 3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 13895 | 0.66 | 0.898301 |
Target: 5'- cGUCgccugcAGGCGacggGGCGCGaacguccAGGAGGCa -3' miRNA: 3'- uCAGau----UCCGCg---CCGCGU-------UCUUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 95812 | 0.67 | 0.892375 |
Target: 5'- cGUCgGGGGC-CuGCGCAAGGccGCCg -3' miRNA: 3'- uCAGaUUCCGcGcCGCGUUCUucCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 57133 | 0.67 | 0.892375 |
Target: 5'- --cCU-GGGCGCGGaCGUAGGcuGGUCu -3' miRNA: 3'- ucaGAuUCCGCGCC-GCGUUCuuCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 30849 | 0.67 | 0.892375 |
Target: 5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3' miRNA: 3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 25464 | 0.67 | 0.892375 |
Target: 5'- uGUCgccgacgugGGGGCGCcaGGCGUAcgGGAacgAGGCUa -3' miRNA: 3'- uCAGa--------UUCCGCG--CCGCGU--UCU---UCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 115925 | 0.67 | 0.892375 |
Target: 5'- cAGUCcuUGAGaGCcgcgaacacGCGGCGCAggcuAGGAGGUa -3' miRNA: 3'- -UCAG--AUUC-CG---------CGCCGCGU----UCUUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 149875 | 0.67 | 0.892375 |
Target: 5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3' miRNA: 3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 148331 | 0.67 | 0.892375 |
Target: 5'- uGGUCUGAGGuUGCGuGCGCGGuc--GCCc -3' miRNA: 3'- -UCAGAUUCC-GCGC-CGCGUUcuucCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 153875 | 0.67 | 0.885573 |
Target: 5'- cGGUUUu-GGUGCuGCaGCGAGuuGGCCg -3' miRNA: 3'- -UCAGAuuCCGCGcCG-CGUUCuuCCGG- -5' |
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24689 | 3' | -55.8 | NC_005264.1 | + | 13335 | 0.67 | 0.885573 |
Target: 5'- ----gGAGGagaGgGGCGCGAGGaugaacgucgGGGCCg -3' miRNA: 3'- ucagaUUCCg--CgCCGCGUUCU----------UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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