miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 13942 0.67 0.885573
Target:  5'- gGGUCUuuGGCua-GCGCGAGAGauaagcgcGGCCa -3'
miRNA:   3'- -UCAGAuuCCGcgcCGCGUUCUU--------CCGG- -5'
24689 3' -55.8 NC_005264.1 + 132362 0.67 0.885573
Target:  5'- ----gGAGGagaGgGGCGCGAGGaugaacgucgGGGCCg -3'
miRNA:   3'- ucagaUUCCg--CgCCGCGUUCU----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 152962 0.67 0.88488
Target:  5'- uGGg--AAGGcCGUGGCGCGccgGGAccgcgcccgauagGGGCCg -3'
miRNA:   3'- -UCagaUUCC-GCGCCGCGU---UCU-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 33935 0.67 0.88488
Target:  5'- uGGg--AAGGcCGUGGCGCGccgGGAccgcgcccgauagGGGCCg -3'
miRNA:   3'- -UCagaUUCC-GCGCCGCGU---UCU-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 38521 0.67 0.881383
Target:  5'- gGGUCUGgacAGGauuaGC-GCGCAGugucaugacguaucuGAAGGCCa -3'
miRNA:   3'- -UCAGAU---UCCg---CGcCGCGUU---------------CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 127811 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 136580 0.67 0.878546
Target:  5'- cGUCgAAGaGCG-GGuCGUAgAGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCgCC-GCGU-UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 8785 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 48893 0.67 0.877831
Target:  5'- cGUCcGAGaaGCGGCacGCGgaaaauuGGAAGGCCa -3'
miRNA:   3'- uCAGaUUCcgCGCCG--CGU-------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 43392 0.67 0.871298
Target:  5'- gAGUCUGuGGGCGgccugGGCaGCGAGAucGCCc -3'
miRNA:   3'- -UCAGAU-UCCGCg----CCG-CGUUCUucCGG- -5'
24689 3' -55.8 NC_005264.1 + 16577 0.67 0.871298
Target:  5'- ----cGGGGCgGCGGCGCAcauGAcuccGGCCg -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGUu--CUu---CCGG- -5'
24689 3' -55.8 NC_005264.1 + 155244 0.67 0.868338
Target:  5'- gGGggaUGAGGaagcaucuccgcaGCGGCGCGGGGuAGGCg -3'
miRNA:   3'- -UCag-AUUCCg------------CGCCGCGUUCU-UCCGg -5'
24689 3' -55.8 NC_005264.1 + 55174 0.67 0.863835
Target:  5'- -cUCU-GGGCGCGGCu---GAAGGCg -3'
miRNA:   3'- ucAGAuUCCGCGCCGcguuCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 36809 0.67 0.863835
Target:  5'- uGUCUc---UGCGGCGCAGGcGAGGCg -3'
miRNA:   3'- uCAGAuuccGCGCCGCGUUC-UUCCGg -5'
24689 3' -55.8 NC_005264.1 + 29625 0.67 0.863835
Target:  5'- aAGcUCUAcGGCGCGGaCGaac-GAGGCCc -3'
miRNA:   3'- -UC-AGAUuCCGCGCC-GCguucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 94401 0.67 0.863835
Target:  5'- cGUCUAugaucAGGcCGCGGCGCcGGuAGuCCa -3'
miRNA:   3'- uCAGAU-----UCC-GCGCCGCGuUCuUCcGG- -5'
24689 3' -55.8 NC_005264.1 + 4446 0.67 0.863835
Target:  5'- cGUCUGAGGCcucugGCuGCGCGAuucuGGGCg -3'
miRNA:   3'- uCAGAUUCCG-----CGcCGCGUUcu--UCCGg -5'
24689 3' -55.8 NC_005264.1 + 83241 0.67 0.863835
Target:  5'- cGUCUAGGccgccgcugauGCGCuGGCGCGGcGAAcuucaauuucGGCCg -3'
miRNA:   3'- uCAGAUUC-----------CGCG-CCGCGUU-CUU----------CCGG- -5'
24689 3' -55.8 NC_005264.1 + 123473 0.67 0.863835
Target:  5'- cGUCUGAGGCcucugGCuGCGCGAuucuGGGCg -3'
miRNA:   3'- uCAGAUUCCG-----CGcCGCGUUcu--UCCGg -5'
24689 3' -55.8 NC_005264.1 + 146910 0.67 0.859256
Target:  5'- gGGUCUAcugggugggcuaucgGGGCaguaguucGUGGCGCA--GAGGCUg -3'
miRNA:   3'- -UCAGAU---------------UCCG--------CGCCGCGUucUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.