miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 99888 0.67 0.856162
Target:  5'- aAGUCUGaccccgaacaaaAGGCGCGGCuugcggccgcGCAAGcccgcgcGGCUa -3'
miRNA:   3'- -UCAGAU------------UCCGCGCCG----------CGUUCuu-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 151841 0.67 0.856162
Target:  5'- aAGaCUGGGGCcgccgcuccgGCGGCGaCAcguGGggGGCg -3'
miRNA:   3'- -UCaGAUUCCG----------CGCCGC-GU---UCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 76093 0.67 0.855383
Target:  5'- cGGcUCUAcGGGCGCGaacaGCGCGgcaucagAGggGGUCu -3'
miRNA:   3'- -UC-AGAU-UCCGCGC----CGCGU-------UCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 52204 0.68 0.848285
Target:  5'- gGGcCgUGGGGCGCgguGGCGCGAGcuGGUa -3'
miRNA:   3'- -UCaG-AUUCCGCG---CCGCGUUCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 21941 0.68 0.848285
Target:  5'- uGGUC---GGCGacucgGGCGCAA-AAGGCCa -3'
miRNA:   3'- -UCAGauuCCGCg----CCGCGUUcUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 77971 0.68 0.848285
Target:  5'- uGUCUuauGuCGaUGGCGCGAGAuacgaAGGCCg -3'
miRNA:   3'- uCAGAuu-CcGC-GCCGCGUUCU-----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 84311 0.68 0.848285
Target:  5'- aAGUCgugcaccGGGCaCGGCGCGAuGGuuacuGGCCu -3'
miRNA:   3'- -UCAGau-----UCCGcGCCGCGUU-CUu----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 10424 0.68 0.843465
Target:  5'- uAGUg-AAGGaCGCGGUGCAAcuuccugucguagacGAGGGCa -3'
miRNA:   3'- -UCAgaUUCC-GCGCCGCGUU---------------CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 3372 0.68 0.843465
Target:  5'- cGUCUGGGG-GCGGCG-AGGGcuucuccggaacgcgGGGUCg -3'
miRNA:   3'- uCAGAUUCCgCGCCGCgUUCU---------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 122399 0.68 0.843465
Target:  5'- cGUCUGGGG-GCGGCG-AGGGcuucuccggaacgcgGGGUCg -3'
miRNA:   3'- uCAGAUUCCgCGCCGCgUUCU---------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 96976 0.68 0.840212
Target:  5'- cGUUUAuAGGUGCGcguucGCGUggGAAGGgCg -3'
miRNA:   3'- uCAGAU-UCCGCGC-----CGCGuuCUUCCgG- -5'
24689 3' -55.8 NC_005264.1 + 117831 0.68 0.840212
Target:  5'- gGGUUcgagggGAGGCGCGGCggagugcgcauGCAAGGcauGGCg -3'
miRNA:   3'- -UCAGa-----UUCCGCGCCG-----------CGUUCUu--CCGg -5'
24689 3' -55.8 NC_005264.1 + 134979 0.68 0.840212
Target:  5'- ----aAAGGCgGCGGCGCAuu-GGGCg -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGUucuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 116528 0.68 0.831949
Target:  5'- cGGUCUucGGUGgGGuCGUu-GggGGCUa -3'
miRNA:   3'- -UCAGAuuCCGCgCC-GCGuuCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 150952 0.68 0.831949
Target:  5'- cAGUCUAcuucGGGUGCaccGGCuGCAAGGcguucuaccguAGGCUa -3'
miRNA:   3'- -UCAGAU----UCCGCG---CCG-CGUUCU-----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 39224 0.68 0.823503
Target:  5'- ------cGGCGCuGGCG-GGGAGGGCCu -3'
miRNA:   3'- ucagauuCCGCG-CCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 139324 0.68 0.823503
Target:  5'- gGGUCgacAGGGCcguaCGGgGgAGGAAGGCUa -3'
miRNA:   3'- -UCAGa--UUCCGc---GCCgCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 4484 0.68 0.823503
Target:  5'- cAGUCgcgcgAGGGuCGCGaGCGgAGGggGGaCUg -3'
miRNA:   3'- -UCAGa----UUCC-GCGC-CGCgUUCuuCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 123511 0.68 0.823503
Target:  5'- cAGUCgcgcgAGGGuCGCGaGCGgAGGggGGaCUg -3'
miRNA:   3'- -UCAGa----UUCC-GCGC-CGCgUUCuuCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 158251 0.68 0.823503
Target:  5'- ------cGGCGCuGGCG-GGGAGGGCCu -3'
miRNA:   3'- ucagauuCCGCG-CCGCgUUCUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.