miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 2597 0.69 0.778819
Target:  5'- aGGUCUccaaaggagAAGGCGCGaGC-CGAGcAGGCg -3'
miRNA:   3'- -UCAGA---------UUCCGCGC-CGcGUUCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 2886 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 3372 0.68 0.843465
Target:  5'- cGUCUGGGG-GCGGCG-AGGGcuucuccggaacgcgGGGUCg -3'
miRNA:   3'- uCAGAUUCCgCGCCGCgUUCU---------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 4446 0.67 0.863835
Target:  5'- cGUCUGAGGCcucugGCuGCGCGAuucuGGGCg -3'
miRNA:   3'- uCAGAUUCCG-----CGcCGCGUUcu--UCCGg -5'
24689 3' -55.8 NC_005264.1 + 4484 0.68 0.823503
Target:  5'- cAGUCgcgcgAGGGuCGCGaGCGgAGGggGGaCUg -3'
miRNA:   3'- -UCAGa----UUCC-GCGC-CGCgUUCuuCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 4490 0.69 0.788055
Target:  5'- cGUCaaGGGGCGCGGUGC-----GGCCg -3'
miRNA:   3'- uCAGa-UUCCGCGCCGCGuucuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 5958 0.71 0.680722
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcuGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU--UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6121 0.66 0.911394
Target:  5'- cGUCcaucAGGUGCGGgaGgGcGAGGGCCg -3'
miRNA:   3'- uCAGau--UCCGCGCCg-CgUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6481 0.74 0.489422
Target:  5'- cGUCgGGGuGCGCGGC-CAucGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCGCCGcGUu-CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6734 0.7 0.710988
Target:  5'- cGGUaCUccgcGGCGUGGCGCGGGAAGuGUUc -3'
miRNA:   3'- -UCA-GAuu--CCGCGCCGCGUUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 8252 0.66 0.919542
Target:  5'- uAGUCU--GGCcaGCGGCGCccuGGuguccgccucguugcAGGCCg -3'
miRNA:   3'- -UCAGAuuCCG--CGCCGCGuu-CU---------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 8785 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 9509 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 10424 0.68 0.843465
Target:  5'- uAGUg-AAGGaCGCGGUGCAAcuuccugucguagacGAGGGCa -3'
miRNA:   3'- -UCAgaUUCC-GCGCCGCGUU---------------CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 11757 0.68 0.806096
Target:  5'- cGUCgucuGGCGCGGCGaaacgguuGAcgcucucguAGGCCg -3'
miRNA:   3'- uCAGauu-CCGCGCCGCguu-----CU---------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 12431 0.75 0.45189
Target:  5'- cGUgCUugGAGGCGCGGUGCGGucuaAAGGCCc -3'
miRNA:   3'- uCA-GA--UUCCGCGCCGCGUUc---UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13335 0.67 0.885573
Target:  5'- ----gGAGGagaGgGGCGCGAGGaugaacgucgGGGCCg -3'
miRNA:   3'- ucagaUUCCg--CgCCGCGUUCU----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13555 0.69 0.778819
Target:  5'- ----aGAGGagaGCGGCGCGGGcGGGaCCg -3'
miRNA:   3'- ucagaUUCCg--CGCCGCGUUCuUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 13615 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 13895 0.66 0.898301
Target:  5'- cGUCgccugcAGGCGacggGGCGCGaacguccAGGAGGCa -3'
miRNA:   3'- uCAGau----UCCGCg---CCGCGU-------UCUUCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.