miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 13942 0.67 0.885573
Target:  5'- gGGUCUuuGGCua-GCGCGAGAGauaagcgcGGCCa -3'
miRNA:   3'- -UCAGAuuCCGcgcCGCGUUCUU--------CCGG- -5'
24689 3' -55.8 NC_005264.1 + 16373 0.68 0.814011
Target:  5'- aAGUgCUGGGGgggaggggaugccCGUGGCGCAuuggcacucgGGGAGGCa -3'
miRNA:   3'- -UCA-GAUUCC-------------GCGCCGCGU----------UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 16577 0.67 0.871298
Target:  5'- ----cGGGGCgGCGGCGCAcauGAcuccGGCCg -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGUu--CUu---CCGG- -5'
24689 3' -55.8 NC_005264.1 + 17268 0.75 0.461128
Target:  5'- cGGUCgucaacgGAGGCGaCGGgGCG-GAGGGCUg -3'
miRNA:   3'- -UCAGa------UUCCGC-GCCgCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 17410 0.71 0.660329
Target:  5'- ----aGAGGUGCGGCGUGAcGucuAGGCCu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUU-Cu--UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 18175 0.69 0.769452
Target:  5'- cGG-CUGAcGCuCGGCGCAAGAAuGCCg -3'
miRNA:   3'- -UCaGAUUcCGcGCCGCGUUCUUcCGG- -5'
24689 3' -55.8 NC_005264.1 + 19389 0.72 0.629589
Target:  5'- cGUUUGGGGCGCauuGGCGaCAugauggGGGAGGCg -3'
miRNA:   3'- uCAGAUUCCGCG---CCGC-GU------UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 19966 0.7 0.740648
Target:  5'- ----aAAGGCGCGGCGCGAGucGacGCa -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUUCuuC--CGg -5'
24689 3' -55.8 NC_005264.1 + 21941 0.68 0.848285
Target:  5'- uGGUC---GGCGacucgGGCGCAA-AAGGCCa -3'
miRNA:   3'- -UCAGauuCCGCg----CCGCGUUcUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22004 0.69 0.759961
Target:  5'- ----aAAGGCGCGGCGCGu--AGGUUu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22319 0.73 0.548241
Target:  5'- uAGUCUGGcGCGCGGgGCAauGGGucuGGGCUa -3'
miRNA:   3'- -UCAGAUUcCGCGCCgCGU--UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 24195 0.77 0.349695
Target:  5'- aAGUCU--GGCGCGGUGCcGGu-GGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGCCGCGuUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 25159 0.68 0.814011
Target:  5'- cGUUUGcggcaggGGGUgGCGGgGCAAGAaagaaaucugaGGGCCg -3'
miRNA:   3'- uCAGAU-------UCCG-CGCCgCGUUCU-----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 25464 0.67 0.892375
Target:  5'- uGUCgccgacgugGGGGCGCcaGGCGUAcgGGAacgAGGCUa -3'
miRNA:   3'- uCAGa--------UUCCGCG--CCGCGU--UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 26122 0.72 0.609092
Target:  5'- cGGcUCgu-GGCGCGGCGCcgaGAGAAuGGCg -3'
miRNA:   3'- -UC-AGauuCCGCGCCGCG---UUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 29470 0.7 0.750356
Target:  5'- cGGaUUGGGGgGCGGUGCAGcGcAGGGCUa -3'
miRNA:   3'- -UCaGAUUCCgCGCCGCGUU-C-UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 29625 0.67 0.863835
Target:  5'- aAGcUCUAcGGCGCGGaCGaac-GAGGCCc -3'
miRNA:   3'- -UC-AGAUuCCGCGCC-GCguucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30404 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30849 0.67 0.892375
Target:  5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3'
miRNA:   3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 31467 0.66 0.898948
Target:  5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3'
miRNA:   3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.