miRNA display CGI


Results 41 - 60 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 33935 0.67 0.88488
Target:  5'- uGGg--AAGGcCGUGGCGCGccgGGAccgcgcccgauagGGGCCg -3'
miRNA:   3'- -UCagaUUCC-GCGCCGCGU---UCU-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 35491 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 35893 0.66 0.898948
Target:  5'- -uUCUuGGGCGUGGUGuCGGGGucgcuGGCUc -3'
miRNA:   3'- ucAGAuUCCGCGCCGC-GUUCUu----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 36095 0.66 0.917262
Target:  5'- -cUCUucGGCGCGGCugGCAGauGGGUa -3'
miRNA:   3'- ucAGAuuCCGCGCCG--CGUUcuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 36237 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 36515 0.74 0.528347
Target:  5'- cGGcCUcgacGAGGCG-GGCGCAGGAGccaucGGCCg -3'
miRNA:   3'- -UCaGA----UUCCGCgCCGCGUUCUU-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 36809 0.67 0.863835
Target:  5'- uGUCUc---UGCGGCGCAGGcGAGGCg -3'
miRNA:   3'- uCAGAuuccGCGCCGCGUUC-UUCCGg -5'
24689 3' -55.8 NC_005264.1 + 37387 0.66 0.905289
Target:  5'- ----cAGGGCGCGGC---AGAGGGaCCg -3'
miRNA:   3'- ucagaUUCCGCGCCGcguUCUUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 38521 0.67 0.881383
Target:  5'- gGGUCUGgacAGGauuaGC-GCGCAGugucaugacguaucuGAAGGCCa -3'
miRNA:   3'- -UCAGAU---UCCg---CGcCGCGUU---------------CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 39224 0.68 0.823503
Target:  5'- ------cGGCGCuGGCG-GGGAGGGCCu -3'
miRNA:   3'- ucagauuCCGCG-CCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 40950 0.69 0.785299
Target:  5'- cGGUCgaucgcagccgcagcGGGCGaCGGCGCGAGcgcgaccGGCCc -3'
miRNA:   3'- -UCAGau-------------UCCGC-GCCGCGUUCuu-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 42942 0.69 0.788055
Target:  5'- cAGUCguacguccGGGCGCGGCaacgccucggaGgGGGAAaGGCCg -3'
miRNA:   3'- -UCAGau------UCCGCGCCG-----------CgUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 43392 0.67 0.871298
Target:  5'- gAGUCUGuGGGCGgccugGGCaGCGAGAucGCCc -3'
miRNA:   3'- -UCAGAU-UCCGCg----CCG-CGUUCUucCGG- -5'
24689 3' -55.8 NC_005264.1 + 43662 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 44903 0.77 0.334341
Target:  5'- cGUCUGGGGCGggaggagagaucCGGCGCAAGcgaaccgcGGGCCc -3'
miRNA:   3'- uCAGAUUCCGC------------GCCGCGUUCu-------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 45385 0.68 0.806096
Target:  5'- gAGgagAAGGCGCGGCaaacgauGGAGGGCg -3'
miRNA:   3'- -UCagaUUCCGCGCCGcgu----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 46584 0.68 0.823503
Target:  5'- aAGUCgcgcgugcgGAGGCucugucccuGCGGgGCGAGGAcGGCUc -3'
miRNA:   3'- -UCAGa--------UUCCG---------CGCCgCGUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 47807 0.68 0.814883
Target:  5'- -uUCgccGGGGCGCauaaGGCGCA-GAAGaGCCu -3'
miRNA:   3'- ucAGa--UUCCGCG----CCGCGUuCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 48893 0.67 0.877831
Target:  5'- cGUCcGAGaaGCGGCacGCGgaaaauuGGAAGGCCa -3'
miRNA:   3'- uCAGaUUCcgCGCCG--CGU-------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 50559 0.71 0.660329
Target:  5'- aAG-CUAGGcGCGCGcGUGCGGGAAGcGCa -3'
miRNA:   3'- -UCaGAUUC-CGCGC-CGCGUUCUUC-CGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.