miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 162816 0.69 0.778819
Target:  5'- cAG-CUAGGGcCGCGGCGUuauGgcGuGCCg -3'
miRNA:   3'- -UCaGAUUCC-GCGCCGCGuu-CuuC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 162688 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 161969 0.69 0.788055
Target:  5'- cAGUCguacguccGGGCGCGGCaacgccucggaGgGGGAAaGGCCg -3'
miRNA:   3'- -UCAGau------UCCGCGCCG-----------CgUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 159977 0.69 0.785299
Target:  5'- cGGUCgaucgcagccgcagcGGGCGaCGGCGCGAGcgcgaccGGCCc -3'
miRNA:   3'- -UCAGau-------------UCCGC-GCCGCGUUCuu-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 158251 0.68 0.823503
Target:  5'- ------cGGCGCuGGCG-GGGAGGGCCu -3'
miRNA:   3'- ucagauuCCGCG-CCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 158052 0.72 0.588664
Target:  5'- gAGUCggugGAGGUGCGcgaacggcgccGCGC-AGAAGGCg -3'
miRNA:   3'- -UCAGa---UUCCGCGC-----------CGCGuUCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 157243 0.68 0.806096
Target:  5'- gGGUCUucguGGCGgcccuCGGCGCGuuGGAGGUg -3'
miRNA:   3'- -UCAGAuu--CCGC-----GCCGCGUu-CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 155264 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 155244 0.67 0.868338
Target:  5'- gGGggaUGAGGaagcaucuccgcaGCGGCGCGGGGuAGGCg -3'
miRNA:   3'- -UCag-AUUCCg------------CGCCGCGUUCU-UCCGg -5'
24689 3' -55.8 NC_005264.1 + 154518 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 153875 0.67 0.885573
Target:  5'- cGGUUUu-GGUGCuGCaGCGAGuuGGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGcCG-CGUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 152983 0.78 0.305132
Target:  5'- cGGUCUccGGCGCGG-GCGAGGAGGa- -3'
miRNA:   3'- -UCAGAuuCCGCGCCgCGUUCUUCCgg -5'
24689 3' -55.8 NC_005264.1 + 152962 0.67 0.88488
Target:  5'- uGGg--AAGGcCGUGGCGCGccgGGAccgcgcccgauagGGGCCg -3'
miRNA:   3'- -UCagaUUCC-GCGCCGCGU---UCU-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 151841 0.67 0.856162
Target:  5'- aAGaCUGGGGCcgccgcuccgGCGGCGaCAcguGGggGGCg -3'
miRNA:   3'- -UCaGAUUCCG----------CGCCGC-GU---UCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 150952 0.68 0.831949
Target:  5'- cAGUCUAcuucGGGUGCaccGGCuGCAAGGcguucuaccguAGGCUa -3'
miRNA:   3'- -UCAGAU----UCCGCG---CCG-CGUUCU-----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 150494 0.66 0.898948
Target:  5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3'
miRNA:   3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 149875 0.67 0.892375
Target:  5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3'
miRNA:   3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 149431 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 149240 0.69 0.778819
Target:  5'- uGUCgcuggccGGUGUGGCGCu--GGGGCCg -3'
miRNA:   3'- uCAGauu----CCGCGCCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 148331 0.67 0.892375
Target:  5'- uGGUCUGAGGuUGCGuGCGCGGuc--GCCc -3'
miRNA:   3'- -UCAGAUUCC-GCGC-CGCGUUcuucCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.