miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 146910 0.67 0.859256
Target:  5'- gGGUCUAcugggugggcuaucgGGGCaguaguucGUGGCGCA--GAGGCUg -3'
miRNA:   3'- -UCAGAU---------------UCCG--------CGCCGCGUucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 140540 0.81 0.223266
Target:  5'- uGUCUGAGGCGCGGCugggaugGC-AGAAGGgCg -3'
miRNA:   3'- uCAGAUUCCGCGCCG-------CGuUCUUCCgG- -5'
24689 3' -55.8 NC_005264.1 + 139324 0.68 0.823503
Target:  5'- gGGUCgacAGGGCcguaCGGgGgAGGAAGGCUa -3'
miRNA:   3'- -UCAGa--UUCCGc---GCCgCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 138329 0.74 0.508728
Target:  5'- uGGUCau-GGCGCGuGCGCGAcAAGGCg -3'
miRNA:   3'- -UCAGauuCCGCGC-CGCGUUcUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 136580 0.67 0.878546
Target:  5'- cGUCgAAGaGCG-GGuCGUAgAGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCgCC-GCGU-UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 136431 0.76 0.415986
Target:  5'- uAGUCUGAGGCGgaagagcaugGGCGCu--GAGGCCg -3'
miRNA:   3'- -UCAGAUUCCGCg---------CCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 134979 0.68 0.840212
Target:  5'- ----aAAGGCgGCGGCGCAuu-GGGCg -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGUucuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 132762 0.69 0.796247
Target:  5'- -uUCUGuccGGGCGCGGCGgcgccgaCGAG-GGGCUa -3'
miRNA:   3'- ucAGAU---UCCGCGCCGC-------GUUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 132642 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 132582 0.69 0.778819
Target:  5'- ----aGAGGagaGCGGCGCGGGcGGGaCCg -3'
miRNA:   3'- ucagaUUCCg--CGCCGCGUUCuUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 132362 0.67 0.885573
Target:  5'- ----gGAGGagaGgGGCGCGAGGaugaacgucgGGGCCg -3'
miRNA:   3'- ucagaUUCCg--CgCCGCGUUCU----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 131458 0.75 0.45189
Target:  5'- cGUgCUugGAGGCGCGGUGCGGucuaAAGGCCc -3'
miRNA:   3'- uCA-GA--UUCCGCGCCGCGUUc---UUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 128536 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 128309 0.66 0.898948
Target:  5'- -uUCUGGGGCaGUuuGGUGCGGucGAAGGCg -3'
miRNA:   3'- ucAGAUUCCG-CG--CCGCGUU--CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 127919 0.72 0.609092
Target:  5'- --cCUGAGGCG-GGCGCcacuGGGCCa -3'
miRNA:   3'- ucaGAUUCCGCgCCGCGuucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 127811 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 125508 0.74 0.489422
Target:  5'- cGUCgGGGuGCGCGGC-CAucGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCGCCGcGUu-CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 125148 0.66 0.911394
Target:  5'- cGUCcaucAGGUGCGGgaGgGcGAGGGCCg -3'
miRNA:   3'- uCAGau--UCCGCGCCg-CgUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 124984 0.7 0.720954
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcguGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 123511 0.68 0.823503
Target:  5'- cAGUCgcgcgAGGGuCGCGaGCGgAGGggGGaCUg -3'
miRNA:   3'- -UCAGa----UUCC-GCGC-CGCgUUCuuCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.