miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 118204 1.12 0.001771
Target:  5'- cAGUCUAAGGCGCGGCGCAAGAAGGCCa -3'
miRNA:   3'- -UCAGAUUCCGCGCCGCGUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 124984 0.7 0.720954
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcguGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22004 0.69 0.759961
Target:  5'- ----aAAGGCGCGGCGCGu--AGGUUu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 154518 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 128536 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 136431 0.76 0.415986
Target:  5'- uAGUCUGAGGCGgaagagcaugGGCGCu--GAGGCCg -3'
miRNA:   3'- -UCAGAUUCCGCg---------CCGCGuucUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 17268 0.75 0.461128
Target:  5'- cGGUCgucaacgGAGGCGaCGGgGCG-GAGGGCUg -3'
miRNA:   3'- -UCAGa------UUCCGC-GCCgCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 125508 0.74 0.489422
Target:  5'- cGUCgGGGuGCGCGGC-CAucGAGGGCCg -3'
miRNA:   3'- uCAGaUUC-CGCGCCGcGUu-CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 51645 0.72 0.619336
Target:  5'- gAG-CUGAGGU--GGUGCAuGAAGGCCa -3'
miRNA:   3'- -UCaGAUUCCGcgCCGCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 93484 0.7 0.720954
Target:  5'- uGUCUGAGGCGCuGCu---GgcGGCCg -3'
miRNA:   3'- uCAGAUUCCGCGcCGcguuCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 50559 0.71 0.660329
Target:  5'- aAG-CUAGGcGCGCGcGUGCGGGAAGcGCa -3'
miRNA:   3'- -UCaGAUUC-CGCGC-CGCGUUCUUC-CGg -5'
24689 3' -55.8 NC_005264.1 + 26122 0.72 0.609092
Target:  5'- cGGcUCgu-GGCGCGGCGCcgaGAGAAuGGCg -3'
miRNA:   3'- -UC-AGauuCCGCGCCGCG---UUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 121912 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 6734 0.7 0.710988
Target:  5'- cGGUaCUccgcGGCGUGGCGCGGGAAGuGUUc -3'
miRNA:   3'- -UCA-GAuu--CCGCGCCGCGUUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 117506 0.78 0.319486
Target:  5'- cGUCUcGGGCGCGGCGCGucugcGGUCg -3'
miRNA:   3'- uCAGAuUCCGCGCCGCGUucuu-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 36515 0.74 0.528347
Target:  5'- cGGcCUcgacGAGGCG-GGCGCAGGAGccaucGGCCg -3'
miRNA:   3'- -UCaGA----UUCCGCgCCGCGUUCUU-----CCGG- -5'
24689 3' -55.8 NC_005264.1 + 74702 0.7 0.717972
Target:  5'- uAGUCaacgacuugUAGGGCGCGGCGCGcGAaacugucuccugcuAGGUUu -3'
miRNA:   3'- -UCAG---------AUUCCGCGCCGCGUuCU--------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 19966 0.7 0.740648
Target:  5'- ----aAAGGCGCGGCGCGAGucGacGCa -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUUCuuC--CGg -5'
24689 3' -55.8 NC_005264.1 + 24195 0.77 0.349695
Target:  5'- aAGUCU--GGCGCGGUGCcGGu-GGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGCCGCGuUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 131458 0.75 0.45189
Target:  5'- cGUgCUugGAGGCGCGGUGCGGucuaAAGGCCc -3'
miRNA:   3'- uCA-GA--UUCCGCGCCGCGUUc---UUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.