miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 155264 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22004 0.69 0.759961
Target:  5'- ----aAAGGCGCGGCGCGu--AGGUUu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 26122 0.72 0.609092
Target:  5'- cGGcUCgu-GGCGCGGCGCcgaGAGAAuGGCg -3'
miRNA:   3'- -UC-AGauuCCGCGCCGCG---UUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 24195 0.77 0.349695
Target:  5'- aAGUCU--GGCGCGGUGCcGGu-GGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGCCGCGuUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 116528 0.68 0.831949
Target:  5'- cGGUCUucGGUGgGGuCGUu-GggGGCUa -3'
miRNA:   3'- -UCAGAuuCCGCgCC-GCGuuCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 11757 0.68 0.806096
Target:  5'- cGUCgucuGGCGCGGCGaaacgguuGAcgcucucguAGGCCg -3'
miRNA:   3'- uCAGauu-CCGCGCCGCguu-----CU---------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 124984 0.7 0.720954
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcguGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 117506 0.78 0.319486
Target:  5'- cGUCUcGGGCGCGGCGCGucugcGGUCg -3'
miRNA:   3'- uCAGAuUCCGCGCCGCGUucuu-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 161969 0.69 0.788055
Target:  5'- cAGUCguacguccGGGCGCGGCaacgccucggaGgGGGAAaGGCCg -3'
miRNA:   3'- -UCAGau------UCCGCGCCG-----------CgUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 121912 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 19966 0.7 0.740648
Target:  5'- ----aAAGGCGCGGCGCGAGucGacGCa -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUUCuuC--CGg -5'
24689 3' -55.8 NC_005264.1 + 132582 0.69 0.778819
Target:  5'- ----aGAGGagaGCGGCGCGGGcGGGaCCg -3'
miRNA:   3'- ucagaUUCCg--CGCCGCGUUCuUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 6734 0.7 0.710988
Target:  5'- cGGUaCUccgcGGCGUGGCGCGGGAAGuGUUc -3'
miRNA:   3'- -UCA-GAuu--CCGCGCCGCGUUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 51645 0.72 0.619336
Target:  5'- gAG-CUGAGGU--GGUGCAuGAAGGCCa -3'
miRNA:   3'- -UCaGAUUCCGcgCCGCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 17268 0.75 0.461128
Target:  5'- cGGUCgucaacgGAGGCGaCGGgGCG-GAGGGCUg -3'
miRNA:   3'- -UCAGa------UUCCGC-GCCgCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 128536 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 52204 0.68 0.848285
Target:  5'- gGGcCgUGGGGCGCgguGGCGCGAGcuGGUa -3'
miRNA:   3'- -UCaG-AUUCCGCG---CCGCGUUCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 10424 0.68 0.843465
Target:  5'- uAGUg-AAGGaCGCGGUGCAAcuuccugucguagacGAGGGCa -3'
miRNA:   3'- -UCAgaUUCC-GCGCCGCGUU---------------CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 46584 0.68 0.823503
Target:  5'- aAGUCgcgcgugcgGAGGCucugucccuGCGGgGCGAGGAcGGCUc -3'
miRNA:   3'- -UCAGa--------UUCCG---------CGCCgCGUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 16373 0.68 0.814011
Target:  5'- aAGUgCUGGGGgggaggggaugccCGUGGCGCAuuggcacucgGGGAGGCa -3'
miRNA:   3'- -UCA-GAUUCC-------------GCGCCGCGU----------UCUUCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.