miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 158251 0.68 0.823503
Target:  5'- ------cGGCGCuGGCG-GGGAGGGCCu -3'
miRNA:   3'- ucagauuCCGCG-CCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 124984 0.7 0.720954
Target:  5'- ----cAGGGCaGCGGCGCAuucgcggaugggAGAcguGGGCCa -3'
miRNA:   3'- ucagaUUCCG-CGCCGCGU------------UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 117506 0.78 0.319486
Target:  5'- cGUCUcGGGCGCGGCGCGucugcGGUCg -3'
miRNA:   3'- uCAGAuUCCGCGCCGCGUucuu-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 123511 0.68 0.823503
Target:  5'- cAGUCgcgcgAGGGuCGCGaGCGgAGGggGGaCUg -3'
miRNA:   3'- -UCAGa----UUCC-GCGC-CGCgUUCuuCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 121912 0.79 0.271427
Target:  5'- ----cGGGGCGCGGCGCGgcggGGAGGGCg -3'
miRNA:   3'- ucagaUUCCGCGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 37387 0.66 0.905289
Target:  5'- ----cAGGGCGCGGC---AGAGGGaCCg -3'
miRNA:   3'- ucagaUUCCGCGCCGcguUCUUCC-GG- -5'
24689 3' -55.8 NC_005264.1 + 128536 0.77 0.357558
Target:  5'- cGUC--AGGCGCGGCGCccucGAG-GGGCCc -3'
miRNA:   3'- uCAGauUCCGCGCCGCG----UUCuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 80166 0.66 0.898948
Target:  5'- uGUCaccGGGCuCGGCGC--GAAGGCg -3'
miRNA:   3'- uCAGau-UCCGcGCCGCGuuCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 115925 0.67 0.892375
Target:  5'- cAGUCcuUGAGaGCcgcgaacacGCGGCGCAggcuAGGAGGUa -3'
miRNA:   3'- -UCAG--AUUC-CG---------CGCCGCGU----UCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 127811 0.67 0.878546
Target:  5'- -----cGGGCGuCGGC-CAGGAcGGCCa -3'
miRNA:   3'- ucagauUCCGC-GCCGcGUUCUuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 55174 0.67 0.863835
Target:  5'- -cUCU-GGGCGCGGCu---GAAGGCg -3'
miRNA:   3'- ucAGAuUCCGCGCCGcguuCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 52204 0.68 0.848285
Target:  5'- gGGcCgUGGGGCGCgguGGCGCGAGcuGGUa -3'
miRNA:   3'- -UCaG-AUUCCGCG---CCGCGUUCuuCCGg -5'
24689 3' -55.8 NC_005264.1 + 10424 0.68 0.843465
Target:  5'- uAGUg-AAGGaCGCGGUGCAAcuuccugucguagacGAGGGCa -3'
miRNA:   3'- -UCAgaUUCC-GCGCCGCGUU---------------CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 25159 0.68 0.814011
Target:  5'- cGUUUGcggcaggGGGUgGCGGgGCAAGAaagaaaucugaGGGCCg -3'
miRNA:   3'- uCAGAU-------UCCG-CGCCgCGUUCU-----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 161969 0.69 0.788055
Target:  5'- cAGUCguacguccGGGCGCGGCaacgccucggaGgGGGAAaGGCCg -3'
miRNA:   3'- -UCAGau------UCCGCGCCG-----------CgUUCUU-CCGG- -5'
24689 3' -55.8 NC_005264.1 + 155264 0.69 0.778819
Target:  5'- aGGUUUAGGGgcggagccgcaCGUGGCGgAAGcggguAGGCCg -3'
miRNA:   3'- -UCAGAUUCC-----------GCGCCGCgUUCu----UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 22004 0.69 0.759961
Target:  5'- ----aAAGGCGCGGCGCGu--AGGUUu -3'
miRNA:   3'- ucagaUUCCGCGCCGCGUucuUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 6734 0.7 0.710988
Target:  5'- cGGUaCUccgcGGCGUGGCGCGGGAAGuGUUc -3'
miRNA:   3'- -UCA-GAuu--CCGCGCCGCGUUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 51645 0.72 0.619336
Target:  5'- gAG-CUGAGGU--GGUGCAuGAAGGCCa -3'
miRNA:   3'- -UCaGAUUCCGcgCCGCGUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 17268 0.75 0.461128
Target:  5'- cGGUCgucaacgGAGGCGaCGGgGCG-GAGGGCUg -3'
miRNA:   3'- -UCAGa------UUCCGC-GCCgCGUuCUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.