miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 3' -55.8 NC_005264.1 + 33935 0.67 0.88488
Target:  5'- uGGg--AAGGcCGUGGCGCGccgGGAccgcgcccgauagGGGCCg -3'
miRNA:   3'- -UCagaUUCC-GCGCCGCGU---UCU-------------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 31467 0.66 0.898948
Target:  5'- cGUCgccgauGGGCGUggauGGUGCGcccagucacgaGGAAGGUCa -3'
miRNA:   3'- uCAGau----UCCGCG----CCGCGU-----------UCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 57133 0.67 0.892375
Target:  5'- --cCU-GGGCGCGGaCGUAGGcuGGUCu -3'
miRNA:   3'- ucaGAuUCCGCGCC-GCGUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 30849 0.67 0.892375
Target:  5'- cGUCgucGGCgGCGGCGCGccgcccGGuAGGCa -3'
miRNA:   3'- uCAGauuCCG-CGCCGCGU------UCuUCCGg -5'
24689 3' -55.8 NC_005264.1 + 95812 0.67 0.892375
Target:  5'- cGUCgGGGGC-CuGCGCAAGGccGCCg -3'
miRNA:   3'- uCAGaUUCCGcGcCGCGUUCUucCGG- -5'
24689 3' -55.8 NC_005264.1 + 25464 0.67 0.892375
Target:  5'- uGUCgccgacgugGGGGCGCcaGGCGUAcgGGAacgAGGCUa -3'
miRNA:   3'- uCAGa--------UUCCGCG--CCGCGU--UCU---UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 153875 0.67 0.885573
Target:  5'- cGGUUUu-GGUGCuGCaGCGAGuuGGCCg -3'
miRNA:   3'- -UCAGAuuCCGCGcCG-CGUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13335 0.67 0.885573
Target:  5'- ----gGAGGagaGgGGCGCGAGGaugaacgucgGGGCCg -3'
miRNA:   3'- ucagaUUCCg--CgCCGCGUUCU----------UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13942 0.67 0.885573
Target:  5'- gGGUCUuuGGCua-GCGCGAGAGauaagcgcGGCCa -3'
miRNA:   3'- -UCAGAuuCCGcgcCGCGUUCUU--------CCGG- -5'
24689 3' -55.8 NC_005264.1 + 121055 0.66 0.898948
Target:  5'- gGGUUUuuGGCGaGGCagGCuuucauGAAGGCCg -3'
miRNA:   3'- -UCAGAuuCCGCgCCG--CGuu----CUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 128309 0.66 0.898948
Target:  5'- -uUCUGGGGCaGUuuGGUGCGGucGAAGGCg -3'
miRNA:   3'- ucAGAUUCCG-CG--CCGCGUU--CUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 104323 0.66 0.898948
Target:  5'- --cUUGAGGCGCGaCGCcgcuuacgAGGAGGuGCCg -3'
miRNA:   3'- ucaGAUUCCGCGCcGCG--------UUCUUC-CGG- -5'
24689 3' -55.8 NC_005264.1 + 35491 0.66 0.921227
Target:  5'- --cCUAGGGgacgacggcgacgcCGCGGCGCAGGu--GCCc -3'
miRNA:   3'- ucaGAUUCC--------------GCGCCGCGUUCuucCGG- -5'
24689 3' -55.8 NC_005264.1 + 30404 0.66 0.920667
Target:  5'- cGGUCgcgcgccggugcgGAGaGCuGCGGCG-GAGGAGGUCu -3'
miRNA:   3'- -UCAGa------------UUC-CG-CGCCGCgUUCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 43662 0.66 0.917262
Target:  5'- cGGUCggcgcgcuGcGCGcCGGCGuUAAGgcGGCCg -3'
miRNA:   3'- -UCAGauu-----C-CGC-GCCGC-GUUCuuCCGG- -5'
24689 3' -55.8 NC_005264.1 + 98530 0.66 0.911394
Target:  5'- cAGUCUu-GGCaGCGGCaacGCGcuguGGGCCg -3'
miRNA:   3'- -UCAGAuuCCG-CGCCG---CGUucu-UCCGG- -5'
24689 3' -55.8 NC_005264.1 + 13615 0.66 0.911394
Target:  5'- cGGUC--GGGaCGCGG-GCAGGGGcGGCg -3'
miRNA:   3'- -UCAGauUCC-GCGCCgCGUUCUU-CCGg -5'
24689 3' -55.8 NC_005264.1 + 6121 0.66 0.911394
Target:  5'- cGUCcaucAGGUGCGGgaGgGcGAGGGCCg -3'
miRNA:   3'- uCAGau--UCCGCGCCg-CgUuCUUCCGG- -5'
24689 3' -55.8 NC_005264.1 + 96879 0.66 0.910192
Target:  5'- gAGUauugaagauGGCaugGCGGCGCGcGAGGGCg -3'
miRNA:   3'- -UCAgauu-----CCG---CGCCGCGUuCUUCCGg -5'
24689 3' -55.8 NC_005264.1 + 103702 0.66 0.905289
Target:  5'- aAGUUgAGGGCcaguggagcgGCGGCGCGGcaucagcggcGgcGGCCg -3'
miRNA:   3'- -UCAGaUUCCG----------CGCCGCGUU----------CuuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.