miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24689 5' -58.9 NC_005264.1 + 31678 0.66 0.77615
Target:  5'- -aGGCagggcUCUCGgCGGGGCUGCCc-- -3'
miRNA:   3'- aaCUGgu---AGAGCgGCCUCGACGGcuu -5'
24689 5' -58.9 NC_005264.1 + 150704 0.66 0.77615
Target:  5'- -aGGCagggcUCUCGgCGGGGCUGCCc-- -3'
miRNA:   3'- aaCUGgu---AGAGCgGCCUCGACGGcuu -5'
24689 5' -58.9 NC_005264.1 + 162073 0.66 0.766773
Target:  5'- -aGaACCGUgUCGCguaGGGGCUccGCCGAAg -3'
miRNA:   3'- aaC-UGGUAgAGCGg--CCUCGA--CGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 122094 0.66 0.766773
Target:  5'- --cGCUGUCUCGCCGcGAcugGCggcgGCCGAGg -3'
miRNA:   3'- aacUGGUAGAGCGGC-CU---CGa---CGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 3067 0.66 0.766773
Target:  5'- --cGCUGUCUCGCCGcGAcugGCggcgGCCGAGg -3'
miRNA:   3'- aacUGGUAGAGCGGC-CU---CGa---CGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 2381 0.66 0.757277
Target:  5'- gUGGCCGUCgccCGCaGGAGCccggcGCCGGc -3'
miRNA:   3'- aACUGGUAGa--GCGgCCUCGa----CGGCUu -5'
24689 5' -58.9 NC_005264.1 + 121408 0.66 0.757277
Target:  5'- gUGGCCGUCgccCGCaGGAGCccggcGCCGGc -3'
miRNA:   3'- aACUGGUAGa--GCGgCCUCGa----CGGCUu -5'
24689 5' -58.9 NC_005264.1 + 33813 0.67 0.708321
Target:  5'- -gGACCggCUCGCCGGcaaGGCUGUa--- -3'
miRNA:   3'- aaCUGGuaGAGCGGCC---UCGACGgcuu -5'
24689 5' -58.9 NC_005264.1 + 37156 0.69 0.576166
Target:  5'- --cGCCAggaUCUCuGCCGGAGCUuCCGGAc -3'
miRNA:   3'- aacUGGU---AGAG-CGGCCUCGAcGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 156183 0.69 0.576166
Target:  5'- --cGCCAggaUCUCuGCCGGAGCUuCCGGAc -3'
miRNA:   3'- aacUGGU---AGAG-CGGCCUCGAcGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 104832 0.71 0.459317
Target:  5'- -cGGCCuGUC-CGCCGGGGCcGCUGAGc -3'
miRNA:   3'- aaCUGG-UAGaGCGGCCUCGaCGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 16929 0.71 0.450124
Target:  5'- cUGACCcgC-CGCCGGAGCUGUUc-- -3'
miRNA:   3'- aACUGGuaGaGCGGCCUCGACGGcuu -5'
24689 5' -58.9 NC_005264.1 + 127385 0.73 0.33924
Target:  5'- -cGACCGUCgcugaugcuuaccggCGCCGGAcgcggcgcguugaaGCUGCCGGAg -3'
miRNA:   3'- aaCUGGUAGa--------------GCGGCCU--------------CGACGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 8358 0.73 0.33924
Target:  5'- -cGACCGUCgcugaugcuuaccggCGCCGGAcgcggcgcguugaaGCUGCCGGAg -3'
miRNA:   3'- aaCUGGUAGa--------------GCGGCCU--------------CGACGGCUU- -5'
24689 5' -58.9 NC_005264.1 + 118239 1.03 0.003121
Target:  5'- aUUGACCAUCUCGCCGGAGCUGCCGAAc -3'
miRNA:   3'- -AACUGGUAGAGCGGCCUCGACGGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.