miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24692 3' -60.8 NC_005264.1 + 14042 0.65 0.713869
Target:  5'- -gUCCGGaCGuGGCGGGGccgggugggaacguGCACGcCAGACu -3'
miRNA:   3'- uuGGGUC-GC-UCGCCCC--------------UGUGC-GUCUG- -5'
24692 3' -60.8 NC_005264.1 + 38794 0.66 0.707041
Target:  5'- -uCCCGGUGAcguacuccGCGGcGACcccgGCGCGGACg -3'
miRNA:   3'- uuGGGUCGCU--------CGCCcCUG----UGCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 155262 0.66 0.707041
Target:  5'- -uCCgCAGCGGcGCGGGGuagGCgGCGgGGACg -3'
miRNA:   3'- uuGG-GUCGCU-CGCCCC---UG-UGCgUCUG- -5'
24692 3' -60.8 NC_005264.1 + 25203 0.66 0.707041
Target:  5'- cGCCCugugucuGuCGAGCGGGGAgagcgacaCGCGCAaGAa -3'
miRNA:   3'- uUGGGu------C-GCUCGCCCCU--------GUGCGU-CUg -5'
24692 3' -60.8 NC_005264.1 + 157820 0.66 0.707041
Target:  5'- -uCCCGGUGAcguacuccGCGGcGACcccgGCGCGGACg -3'
miRNA:   3'- uuGGGUCGCU--------CGCCcCUG----UGCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 37785 0.66 0.706063
Target:  5'- gGACUCgaGGCGAGCGGcGGagaagagGCGCGCcgccGACg -3'
miRNA:   3'- -UUGGG--UCGCUCGCC-CC-------UGUGCGu---CUG- -5'
24692 3' -60.8 NC_005264.1 + 160262 0.66 0.697236
Target:  5'- aGACCUcGCGGGCGGaGGACucugaAGACu -3'
miRNA:   3'- -UUGGGuCGCUCGCC-CCUGugcg-UCUG- -5'
24692 3' -60.8 NC_005264.1 + 150065 0.66 0.697236
Target:  5'- cGCCUAGCGGucguGCGGcugcguugcGGACG-GCAGGCg -3'
miRNA:   3'- uUGGGUCGCU----CGCC---------CCUGUgCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 122638 0.66 0.697236
Target:  5'- cGCCgCGGgGGGCcgcgagGGcGGGCGCGCuGACa -3'
miRNA:   3'- uUGG-GUCgCUCG------CC-CCUGUGCGuCUG- -5'
24692 3' -60.8 NC_005264.1 + 31038 0.66 0.697236
Target:  5'- cGCCUAGCGGucguGCGGcugcguugcGGACG-GCAGGCg -3'
miRNA:   3'- uUGGGUCGCU----CGCC---------CCUGUgCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 3611 0.66 0.697236
Target:  5'- cGCCgCGGgGGGCcgcgagGGcGGGCGCGCuGACa -3'
miRNA:   3'- uUGG-GUCgCUCG------CC-CCUGUGCGuCUG- -5'
24692 3' -60.8 NC_005264.1 + 130860 0.66 0.697236
Target:  5'- gAGCgaAGCagGAGCGGGGAgCACGUcaacaAGACa -3'
miRNA:   3'- -UUGggUCG--CUCGCCCCU-GUGCG-----UCUG- -5'
24692 3' -60.8 NC_005264.1 + 41235 0.66 0.697236
Target:  5'- aGACCUcGCGGGCGGaGGACucugaAGACu -3'
miRNA:   3'- -UUGGGuCGCUCGCC-CCUGugcg-UCUG- -5'
24692 3' -60.8 NC_005264.1 + 43204 0.66 0.691328
Target:  5'- cGGgCCGGCgGGGgGGGGgggggcuacggcgggGCugGCGGGCg -3'
miRNA:   3'- -UUgGGUCG-CUCgCCCC---------------UGugCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 162231 0.66 0.691328
Target:  5'- cGGgCCGGCgGGGgGGGGgggggcuacggcgggGCugGCGGGCg -3'
miRNA:   3'- -UUgGGUCG-CUCgCCCC---------------UGugCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 91554 0.66 0.687379
Target:  5'- uAUCgGGCGcGGCgGGGGGCACG-AGGCu -3'
miRNA:   3'- uUGGgUCGC-UCG-CCCCUGUGCgUCUG- -5'
24692 3' -60.8 NC_005264.1 + 67998 0.66 0.687379
Target:  5'- aGGCaCCGGCucguuGCGGGGGuCGgGCAGAUc -3'
miRNA:   3'- -UUG-GGUCGcu---CGCCCCU-GUgCGUCUG- -5'
24692 3' -60.8 NC_005264.1 + 53080 0.66 0.677479
Target:  5'- gGACCCAGCGGGagugucuaagcUGGuGGACaagGCGCucGGCg -3'
miRNA:   3'- -UUGGGUCGCUC-----------GCC-CCUG---UGCGu-CUG- -5'
24692 3' -60.8 NC_005264.1 + 149895 0.66 0.670527
Target:  5'- cGCCCGGUaGGCaacggcgucucgaucGGGGACGCGUcgggggaGGACu -3'
miRNA:   3'- uUGGGUCGcUCG---------------CCCCUGUGCG-------UCUG- -5'
24692 3' -60.8 NC_005264.1 + 30869 0.66 0.670527
Target:  5'- cGCCCGGUaGGCaacggcgucucgaucGGGGACGCGUcgggggaGGACu -3'
miRNA:   3'- uUGGGUCGcUCG---------------CCCCUGUGCG-------UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.