miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24695 3' -55.2 NC_005264.1 + 73803 0.66 0.911522
Target:  5'- uGGC-GCAGggGUCGGUuaUCAGCUCg- -3'
miRNA:   3'- gUUGuCGUCgaCGGCCA--AGUCGAGaa -5'
24695 3' -55.2 NC_005264.1 + 14097 0.66 0.891989
Target:  5'- -uAUA-CGGCUGCUGGgcCGGCUCUg -3'
miRNA:   3'- guUGUcGUCGACGGCCaaGUCGAGAa -5'
24695 3' -55.2 NC_005264.1 + 134409 0.66 0.891989
Target:  5'- cUAAC-GCAGCUGCC-GUUCGGUcCUa -3'
miRNA:   3'- -GUUGuCGUCGACGGcCAAGUCGaGAa -5'
24695 3' -55.2 NC_005264.1 + 103734 0.66 0.891989
Target:  5'- uCAGCGGCGGCgGCCgccaugcuuaGGUUCAuGCUg-- -3'
miRNA:   3'- -GUUGUCGUCGaCGG----------CCAAGU-CGAgaa -5'
24695 3' -55.2 NC_005264.1 + 103130 0.67 0.877756
Target:  5'- -cGCGGUAGCcGCCGGcgCGGCg--- -3'
miRNA:   3'- guUGUCGUCGaCGGCCaaGUCGagaa -5'
24695 3' -55.2 NC_005264.1 + 16565 0.67 0.877756
Target:  5'- gGugGGCGGC-GCCGGggCGGCg--- -3'
miRNA:   3'- gUugUCGUCGaCGGCCaaGUCGagaa -5'
24695 3' -55.2 NC_005264.1 + 72917 0.67 0.877756
Target:  5'- uCGACAGCgucgaAGcCUGCCGGUUCAacgguaaacuGUUCg- -3'
miRNA:   3'- -GUUGUCG-----UC-GACGGCCAAGU----------CGAGaa -5'
24695 3' -55.2 NC_005264.1 + 2658 0.67 0.877756
Target:  5'- gCAGCGGCAGCUcugacguccuaGUCGGgUCcgcaagcgGGCUCUUg -3'
miRNA:   3'- -GUUGUCGUCGA-----------CGGCCaAG--------UCGAGAA- -5'
24695 3' -55.2 NC_005264.1 + 8490 0.67 0.854684
Target:  5'- aAGCAGCAGaguggGCCGGcgCAGaUCUUg -3'
miRNA:   3'- gUUGUCGUCga---CGGCCaaGUCgAGAA- -5'
24695 3' -55.2 NC_005264.1 + 101705 0.68 0.793765
Target:  5'- gAGCGuCAGCUGCCGGUaggacagcaUCAGCa--- -3'
miRNA:   3'- gUUGUcGUCGACGGCCA---------AGUCGagaa -5'
24695 3' -55.2 NC_005264.1 + 22061 0.69 0.784373
Target:  5'- gGACGGUAGCgccgccGCCGGaaggCGGUUCUUg -3'
miRNA:   3'- gUUGUCGUCGa-----CGGCCaa--GUCGAGAA- -5'
24695 3' -55.2 NC_005264.1 + 80419 0.71 0.642205
Target:  5'- aCGACAGCuGCUGCCcccgcCAGCUCUc -3'
miRNA:   3'- -GUUGUCGuCGACGGccaa-GUCGAGAa -5'
24695 3' -55.2 NC_005264.1 + 122259 1.06 0.004339
Target:  5'- cCAACAGCAGCUGCCGGUUCAGCUCUUg -3'
miRNA:   3'- -GUUGUCGUCGACGGCCAAGUCGAGAA- -5'
24695 3' -55.2 NC_005264.1 + 3232 1.06 0.004339
Target:  5'- cCAACAGCAGCUGCCGGUUCAGCUCUUg -3'
miRNA:   3'- -GUUGUCGUCGACGGCCAAGUCGAGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.