miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24695 5' -61.8 NC_005264.1 + 94409 0.66 0.704057
Target:  5'- aUCA--GGCCGCGGCGCCGguaGUCCa-- -3'
miRNA:   3'- -GGUccUCGGCGUCGCGGUg--CAGGgac -5'
24695 5' -61.8 NC_005264.1 + 19326 0.66 0.704057
Target:  5'- cCCAGGAaaGCCGgaaGGaCGCCGCGUagCCa- -3'
miRNA:   3'- -GGUCCU--CGGCg--UC-GCGGUGCAg-GGac -5'
24695 5' -61.8 NC_005264.1 + 89768 0.66 0.704057
Target:  5'- -aAGuGAGCC-CGacuaCGCCACGUCUCUGg -3'
miRNA:   3'- ggUC-CUCGGcGUc---GCGGUGCAGGGAC- -5'
24695 5' -61.8 NC_005264.1 + 159077 0.66 0.704057
Target:  5'- aCCAaGGGcCCGCAGCGCCccgGCGgcaagaggCCCc- -3'
miRNA:   3'- -GGUcCUC-GGCGUCGCGG---UGCa-------GGGac -5'
24695 5' -61.8 NC_005264.1 + 40050 0.66 0.704057
Target:  5'- aCCAaGGGcCCGCAGCGCCccgGCGgcaagaggCCCc- -3'
miRNA:   3'- -GGUcCUC-GGCGUCGCGG---UGCa-------GGGac -5'
24695 5' -61.8 NC_005264.1 + 33928 0.66 0.703098
Target:  5'- gCCAGGcugggaaGGCCGUGGCGCgccgggacCGCG-CCCg- -3'
miRNA:   3'- -GGUCC-------UCGGCGUCGCG--------GUGCaGGGac -5'
24695 5' -61.8 NC_005264.1 + 65235 0.66 0.694443
Target:  5'- ---uGAGCCGUAGcCGCCGCGgCCgaGg -3'
miRNA:   3'- ggucCUCGGCGUC-GCGGUGCaGGgaC- -5'
24695 5' -61.8 NC_005264.1 + 15135 0.66 0.693479
Target:  5'- -gGGGAauggucuGuCUGCAcCGCCGCGUCUCUGg -3'
miRNA:   3'- ggUCCU-------C-GGCGUcGCGGUGCAGGGAC- -5'
24695 5' -61.8 NC_005264.1 + 114094 0.66 0.684782
Target:  5'- aCAGGAGCuUGUAGUcggGCCAguCGgCCCUGc -3'
miRNA:   3'- gGUCCUCG-GCGUCG---CGGU--GCaGGGAC- -5'
24695 5' -61.8 NC_005264.1 + 69578 0.66 0.684782
Target:  5'- gCCGGG-GCCcUGGCGCCACcuagCCCg- -3'
miRNA:   3'- -GGUCCuCGGcGUCGCGGUGca--GGGac -5'
24695 5' -61.8 NC_005264.1 + 19227 0.66 0.684782
Target:  5'- gCAGG-GCCgGCAGuUGCUACGUgCCa- -3'
miRNA:   3'- gGUCCuCGG-CGUC-GCGGUGCAgGGac -5'
24695 5' -61.8 NC_005264.1 + 42091 0.66 0.684782
Target:  5'- gCCGGGAuaucccucgucGUCGCAGuCGCCGgcacCGUCCUc- -3'
miRNA:   3'- -GGUCCU-----------CGGCGUC-GCGGU----GCAGGGac -5'
24695 5' -61.8 NC_005264.1 + 159569 0.66 0.665348
Target:  5'- cCCAGG-GaCGUGGCGCUGCGgCuCCUGg -3'
miRNA:   3'- -GGUCCuCgGCGUCGCGGUGCaG-GGAC- -5'
24695 5' -61.8 NC_005264.1 + 40542 0.66 0.665348
Target:  5'- cCCAGG-GaCGUGGCGCUGCGgCuCCUGg -3'
miRNA:   3'- -GGUCCuCgGCGUCGCGGUGCaG-GGAC- -5'
24695 5' -61.8 NC_005264.1 + 86435 0.66 0.665348
Target:  5'- gCCGGGcGCC-CuauGUGCCACG-CCCUc -3'
miRNA:   3'- -GGUCCuCGGcGu--CGCGGUGCaGGGAc -5'
24695 5' -61.8 NC_005264.1 + 5063 0.66 0.65559
Target:  5'- gCAGGGGUCGCaaGGCgGCCAgccCGUCCg-- -3'
miRNA:   3'- gGUCCUCGGCG--UCG-CGGU---GCAGGgac -5'
24695 5' -61.8 NC_005264.1 + 33240 0.66 0.65559
Target:  5'- aCCAGGAaggaacgaggaaGCaGCGGCGaacgcgcgauCCGCGcCCCUGa -3'
miRNA:   3'- -GGUCCU------------CGgCGUCGC----------GGUGCaGGGAC- -5'
24695 5' -61.8 NC_005264.1 + 124090 0.66 0.65559
Target:  5'- gCAGGGGUCGCaaGGCgGCCAgccCGUCCg-- -3'
miRNA:   3'- gGUCCUCGGCG--UCG-CGGU---GCAGGgac -5'
24695 5' -61.8 NC_005264.1 + 46721 0.66 0.65559
Target:  5'- gCGGcaGAGgCGCAGCGCUAUGUCUg-- -3'
miRNA:   3'- gGUC--CUCgGCGUCGCGGUGCAGGgac -5'
24695 5' -61.8 NC_005264.1 + 152267 0.66 0.65559
Target:  5'- aCCAGGAaggaacgaggaaGCaGCGGCGaacgcgcgauCCGCGcCCCUGa -3'
miRNA:   3'- -GGUCCU------------CGgCGUCGC----------GGUGCaGGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.