miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 3589 1.1 0.004517
Target:  5'- gCCAGGAGGCGCGAAGAAUUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCGCGCUUCUUAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 122616 1.1 0.004517
Target:  5'- gCCAGGAGGCGCGAAGAAUUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCGCGCUUCUUAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 40804 0.78 0.424972
Target:  5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3'
miRNA:   3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 159830 0.78 0.424972
Target:  5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3'
miRNA:   3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 131575 0.77 0.469547
Target:  5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3'
miRNA:   3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 12548 0.77 0.469547
Target:  5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3'
miRNA:   3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 106739 0.75 0.56802
Target:  5'- -aAGGAuGGUGCGggGGA--GCCGCCu -3'
miRNA:   3'- ggUCCU-CCGCGCuuCUUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 82274 0.73 0.669833
Target:  5'- aCC-GGA-GCGCGAAGggU--CCGCCGa -3'
miRNA:   3'- -GGuCCUcCGCGCUUCuuAauGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 133735 0.73 0.689079
Target:  5'- cUCGGGGGGUuCGAGGAcgUguucgucauucgcACCGCCGa -3'
miRNA:   3'- -GGUCCUCCGcGCUUCUuaA-------------UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 54438 0.73 0.690088
Target:  5'- aCAugcuGGCGCGggGGAUgcccACCGCCGa -3'
miRNA:   3'- gGUccu-CCGCGCuuCUUAa---UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 122642 0.73 0.700148
Target:  5'- gCGGGGGGcCGCGAGGGcggGCgCGCUGa -3'
miRNA:   3'- gGUCCUCC-GCGCUUCUuaaUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 3615 0.73 0.700148
Target:  5'- gCGGGGGGcCGCGAGGGcggGCgCGCUGa -3'
miRNA:   3'- gGUCCUCC-GCGCUUCUuaaUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 26382 0.72 0.729949
Target:  5'- -gAGGAGuCGCGAGGAgaagcaagccGUaGCCGCCGa -3'
miRNA:   3'- ggUCCUCcGCGCUUCU----------UAaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 147543 0.72 0.729949
Target:  5'- --cGGAaucuuucccgcGGCGCGAAGug--GCCGCCGa -3'
miRNA:   3'- gguCCU-----------CCGCGCUUCuuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 138905 0.72 0.739727
Target:  5'- cCCAuccGGcGGCGCGAccAGA---ACCGCCGa -3'
miRNA:   3'- -GGU---CCuCCGCGCU--UCUuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 119131 0.72 0.743612
Target:  5'- -gGGGAGG-GCGAGGAcgcaugggggagaaaAUgaaUGCCGCCGg -3'
miRNA:   3'- ggUCCUCCgCGCUUCU---------------UA---AUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 39812 0.72 0.749411
Target:  5'- cCCuGGuGG-GCGAGGAGgcaugUGCCGCCc -3'
miRNA:   3'- -GGuCCuCCgCGCUUCUUa----AUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 79877 0.72 0.749411
Target:  5'- gUCAcGGGGGCGCGgcGGcg-ACCGUCGc -3'
miRNA:   3'- -GGU-CCUCCGCGCuuCUuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 104321 0.72 0.749411
Target:  5'- aCCuuGAGGCGCGAcgccgcuuacgaGGAggUGCCGCUc -3'
miRNA:   3'- -GGucCUCCGCGCU------------UCUuaAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 82362 0.72 0.749411
Target:  5'- gCCAGGcAGGCGCGucGAuccGgUGCCGg -3'
miRNA:   3'- -GGUCC-UCCGCGCuuCUuaaUgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.