miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 37260 0.72 0.749411
Target:  5'- uCCAGGAuacuugGGCGCGA-----UGCCGCCc -3'
miRNA:   3'- -GGUCCU------CCGCGCUucuuaAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 158838 0.72 0.749411
Target:  5'- cCCuGGuGG-GCGAGGAGgcaugUGCCGCCc -3'
miRNA:   3'- -GGuCCuCCgCGCUUCUUa----AUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 13286 0.72 0.762793
Target:  5'- gCCAGcGAGGCGggucguggagcucccCGGAGGAcgGCCGCgCGg -3'
miRNA:   3'- -GGUC-CUCCGC---------------GCUUCUUaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 132313 0.72 0.762793
Target:  5'- gCCAGcGAGGCGggucguggagcucccCGGAGGAcgGCCGCgCGg -3'
miRNA:   3'- -GGUC-CUCCGC---------------GCUUCUUaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 131988 0.71 0.777809
Target:  5'- aCCGGGcGGCGCGcc-----GCCGCCGa -3'
miRNA:   3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 12962 0.71 0.796106
Target:  5'- aCCGGGcGGCGCGc------GCCGCCGa -3'
miRNA:   3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 69405 0.71 0.805037
Target:  5'- gCGGGuAGGCGCGcc----UGCCGCCGu -3'
miRNA:   3'- gGUCC-UCCGCGCuucuuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 123385 0.7 0.830862
Target:  5'- aCCuguuGGAGGCGUGGugcgAGAugcagaACCGCCa -3'
miRNA:   3'- -GGu---CCUCCGCGCU----UCUuaa---UGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 43893 0.7 0.837483
Target:  5'- -aAGGGGGCGcCGGAGAcgauagcgcgGCCGUCGc -3'
miRNA:   3'- ggUCCUCCGC-GCUUCUuaa-------UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 31519 0.7 0.83912
Target:  5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3'
miRNA:   3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5'
24696 5' -54.1 NC_005264.1 + 150546 0.7 0.83912
Target:  5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3'
miRNA:   3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5'
24696 5' -54.1 NC_005264.1 + 115734 0.7 0.83912
Target:  5'- gUAGGGGGCGCGgcGAGcgcuaUACucuCGCCGu -3'
miRNA:   3'- gGUCCUCCGCGCuuCUUa----AUG---GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 35983 0.7 0.847191
Target:  5'- -gAGGGGGCGCGGAGAGcgaaACgCGCa- -3'
miRNA:   3'- ggUCCUCCGCGCUUCUUaa--UG-GCGgc -5'
24696 5' -54.1 NC_005264.1 + 25167 0.7 0.852725
Target:  5'- gCAGGGGGUgGCGggGcaagaaagaaaucuGAggGCCGCCc -3'
miRNA:   3'- gGUCCUCCG-CGCuuC--------------UUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 3472 0.7 0.855067
Target:  5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3'
miRNA:   3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 122499 0.7 0.855067
Target:  5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3'
miRNA:   3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 59797 0.69 0.870209
Target:  5'- gCAGGGGGCGCGuAGcgcaccaUGCuUGCCGg -3'
miRNA:   3'- gGUCCUCCGCGCuUCuua----AUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 13332 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 132359 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 73960 0.69 0.877464
Target:  5'- cCCAGGGGGC-UGAAGAagucgcucGUUACaauaaacccgCGCCGa -3'
miRNA:   3'- -GGUCCUCCGcGCUUCU--------UAAUG----------GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.