miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 46260 0.67 0.95483
Target:  5'- gCCuGGGGGCGUuuAGGGg--UCGCCGa -3'
miRNA:   3'- -GGuCCUCCGCGcuUCUUaauGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 29193 0.67 0.95483
Target:  5'- cCCAGGuGGCGUGcAAGuGUUGCgugCGUCa -3'
miRNA:   3'- -GGUCCuCCGCGC-UUCuUAAUG---GCGGc -5'
24696 5' -54.1 NC_005264.1 + 76502 0.67 0.95483
Target:  5'- gUCGGGGGGaauagGCGAccgucUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCg----CGCUucuuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 94531 0.67 0.95083
Target:  5'- -uGGGAGGgcaGCGGcgccgcacugAGAAaUGCCGCUGg -3'
miRNA:   3'- ggUCCUCCg--CGCU----------UCUUaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 23993 0.67 0.946599
Target:  5'- -gGGGAGGUG-GAuGAGgcggGCCGCUGa -3'
miRNA:   3'- ggUCCUCCGCgCUuCUUaa--UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 90649 0.67 0.946599
Target:  5'- -aAGGGcGCGCGGAGAccgcAUUGCUGgCGg -3'
miRNA:   3'- ggUCCUcCGCGCUUCU----UAAUGGCgGC- -5'
24696 5' -54.1 NC_005264.1 + 69582 0.67 0.942136
Target:  5'- uUCAGGuuGCGCGAAcgcgccgacGAGggcGCCGCCc -3'
miRNA:   3'- -GGUCCucCGCGCUU---------CUUaa-UGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 129574 0.67 0.942136
Target:  5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3'
miRNA:   3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 84320 0.67 0.942136
Target:  5'- aCCGGGcacGGCGCGAu-GGUUACUgGCCu -3'
miRNA:   3'- -GGUCCu--CCGCGCUucUUAAUGG-CGGc -5'
24696 5' -54.1 NC_005264.1 + 95362 0.67 0.942136
Target:  5'- aCGGGcGGCGCG------UGCCGCCa -3'
miRNA:   3'- gGUCCuCCGCGCuucuuaAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 76215 0.67 0.942136
Target:  5'- gCAGaaGAGGUgGCGAAGAAagGCUGUCGc -3'
miRNA:   3'- gGUC--CUCCG-CGCUUCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 10547 0.67 0.942136
Target:  5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3'
miRNA:   3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 109632 0.67 0.939345
Target:  5'- gCGGGGGGCGCGAcGGuugcaacucgcgGCC-CCGg -3'
miRNA:   3'- gGUCCUCCGCGCUuCUuaa---------UGGcGGC- -5'
24696 5' -54.1 NC_005264.1 + 97789 0.67 0.937438
Target:  5'- -uGGGcGGCGCGGcguaauGAGUagGCUGCCGa -3'
miRNA:   3'- ggUCCuCCGCGCUu-----CUUAa-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 101404 0.67 0.937438
Target:  5'- -----cGGCGcCGAGGAGcggGCCGCCGa -3'
miRNA:   3'- gguccuCCGC-GCUUCUUaa-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 125160 0.68 0.932502
Target:  5'- gCGGGAGG-GCGAGG----GCCGCgCGc -3'
miRNA:   3'- gGUCCUCCgCGCUUCuuaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 6133 0.68 0.932502
Target:  5'- gCGGGAGG-GCGAGG----GCCGCgCGc -3'
miRNA:   3'- gGUCCUCCgCGCUUCuuaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 92952 0.68 0.932502
Target:  5'- gCguGGuaaguacuugcuGGGCGCGAAGcgcguCCGCCGu -3'
miRNA:   3'- -GguCC------------UCCGCGCUUCuuaauGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 127409 0.68 0.927328
Target:  5'- gCC-GGAcgcGGCGCGuuGAA--GCUGCCGg -3'
miRNA:   3'- -GGuCCU---CCGCGCuuCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 8382 0.68 0.927328
Target:  5'- gCC-GGAcgcGGCGCGuuGAA--GCUGCCGg -3'
miRNA:   3'- -GGuCCU---CCGCGCuuCUUaaUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.