miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 8382 0.68 0.927328
Target:  5'- gCC-GGAcgcGGCGCGuuGAA--GCUGCCGg -3'
miRNA:   3'- -GGuCCU---CCGCGCuuCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 19416 0.68 0.927328
Target:  5'- -gGGGAGGCgagGCGccGggUgugGCCGCgGg -3'
miRNA:   3'- ggUCCUCCG---CGCuuCuuAa--UGGCGgC- -5'
24696 5' -54.1 NC_005264.1 + 37787 0.68 0.921916
Target:  5'- aCucGAGGCgagcgGCGGAGAAgaggcgcGCCGCCGa -3'
miRNA:   3'- gGucCUCCG-----CGCUUCUUaa-----UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 13903 0.68 0.921362
Target:  5'- gCAGGcgacgGGGCGCGAacguccaGGAGgcaaaGCUGCCGc -3'
miRNA:   3'- gGUCC-----UCCGCGCU-------UCUUaa---UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 78959 0.68 0.910379
Target:  5'- gCAGGuGuGCGCGAAGuucggcACgGCCGa -3'
miRNA:   3'- gGUCCuC-CGCGCUUCuuaa--UGgCGGC- -5'
24696 5' -54.1 NC_005264.1 + 96277 0.68 0.904256
Target:  5'- gCAGGuGGCgGCGGAGcuuGUggaaAUCGCCGa -3'
miRNA:   3'- gGUCCuCCG-CGCUUCu--UAa---UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 76295 0.68 0.904256
Target:  5'- aCCAucuGGGCGCGggGGG--GCUGCUGg -3'
miRNA:   3'- -GGUcc-UCCGCGCuuCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 159069 0.69 0.8979
Target:  5'- gUCAGGuGGUGCaAGGAAgccuugcguCCGCCGu -3'
miRNA:   3'- -GGUCCuCCGCGcUUCUUaau------GGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 52674 0.69 0.8979
Target:  5'- gCCAGGAuaGGCcccaaagccGCGgcGggUUucGCCGCCc -3'
miRNA:   3'- -GGUCCU--CCG---------CGCuuCuuAA--UGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 145159 0.69 0.891313
Target:  5'- gCCAGcGGcugacgagccGGCGUGAcucuGAGUUGCCGCUa -3'
miRNA:   3'- -GGUC-CU----------CCGCGCUu---CUUAAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 37573 0.69 0.891313
Target:  5'- gCCGcGGAGG-GCGAAGAAcaaguCgCGCCGa -3'
miRNA:   3'- -GGU-CCUCCgCGCUUCUUaau--G-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 45037 0.69 0.891313
Target:  5'- gCAGGAuggacGGCGaCGAGGA--UGCCGCg- -3'
miRNA:   3'- gGUCCU-----CCGC-GCUUCUuaAUGGCGgc -5'
24696 5' -54.1 NC_005264.1 + 155824 0.69 0.8845
Target:  5'- -aAGGGGGUacUGGAGAGgaGCCGCCGc -3'
miRNA:   3'- ggUCCUCCGc-GCUUCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 146822 0.69 0.8845
Target:  5'- gCAcGGAGGCGCGgcGGucGUcGCCuGCCa -3'
miRNA:   3'- gGU-CCUCCGCGCuuCU--UAaUGG-CGGc -5'
24696 5' -54.1 NC_005264.1 + 36798 0.69 0.8845
Target:  5'- -aAGGGGGUacUGGAGAGgaGCCGCCGc -3'
miRNA:   3'- ggUCCUCCGc-GCUUCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 73960 0.69 0.877464
Target:  5'- cCCAGGGGGC-UGAAGAagucgcucGUUACaauaaacccgCGCCGa -3'
miRNA:   3'- -GGUCCUCCGcGCUUCU--------UAAUG----------GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 132359 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 13332 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 59797 0.69 0.870209
Target:  5'- gCAGGGGGCGCGuAGcgcaccaUGCuUGCCGg -3'
miRNA:   3'- gGUCCUCCGCGCuUCuua----AUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 122499 0.7 0.855067
Target:  5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3'
miRNA:   3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.