miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 3472 0.7 0.855067
Target:  5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3'
miRNA:   3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 3589 1.1 0.004517
Target:  5'- gCCAGGAGGCGCGAAGAAUUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCGCGCUUCUUAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 3615 0.73 0.700148
Target:  5'- gCGGGGGGcCGCGAGGGcggGCgCGCUGa -3'
miRNA:   3'- gGUCCUCC-GCGCUUCUuaaUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 3686 0.66 0.968612
Target:  5'- gCGGGGccuGGCGCGGaaAGGGcgcacaguacUUGCCGCgGg -3'
miRNA:   3'- gGUCCU---CCGCGCU--UCUU----------AAUGGCGgC- -5'
24696 5' -54.1 NC_005264.1 + 3730 0.66 0.96549
Target:  5'- aCgAGGAaGaCGaCGAGGAGcggggccucUUGCCGCCGg -3'
miRNA:   3'- -GgUCCUcC-GC-GCUUCUU---------AAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 6133 0.68 0.932502
Target:  5'- gCGGGAGG-GCGAGG----GCCGCgCGc -3'
miRNA:   3'- gGUCCUCCgCGCUUCuuaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 8382 0.68 0.927328
Target:  5'- gCC-GGAcgcGGCGCGuuGAA--GCUGCCGg -3'
miRNA:   3'- -GGuCCU---CCGCGCuuCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 10547 0.67 0.942136
Target:  5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3'
miRNA:   3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 12548 0.77 0.469547
Target:  5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3'
miRNA:   3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 12962 0.71 0.796106
Target:  5'- aCCGGGcGGCGCGc------GCCGCCGa -3'
miRNA:   3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 13286 0.72 0.762793
Target:  5'- gCCAGcGAGGCGggucguggagcucccCGGAGGAcgGCCGCgCGg -3'
miRNA:   3'- -GGUC-CUCCGC---------------GCUUCUUaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 13332 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 13577 0.66 0.968612
Target:  5'- aCCGGGgaaGGGCGgaaCGAAGAcgggACCGgCGa -3'
miRNA:   3'- -GGUCC---UCCGC---GCUUCUuaa-UGGCgGC- -5'
24696 5' -54.1 NC_005264.1 + 13903 0.68 0.921362
Target:  5'- gCAGGcgacgGGGCGCGAacguccaGGAGgcaaaGCUGCCGc -3'
miRNA:   3'- gGUCC-----UCCGCGCU-------UCUUaa---UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 17278 0.68 0.927328
Target:  5'- --cGGAGGCGaCGggGcgGAggGCUGCCc -3'
miRNA:   3'- gguCCUCCGC-GCuuC--UUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 19416 0.68 0.927328
Target:  5'- -gGGGAGGCgagGCGccGggUgugGCCGCgGg -3'
miRNA:   3'- ggUCCUCCG---CGCuuCuuAa--UGGCGgC- -5'
24696 5' -54.1 NC_005264.1 + 20014 0.66 0.971528
Target:  5'- uCCGGuuGGCGCGAuuguGGAGUccUACCaugGCCu -3'
miRNA:   3'- -GGUCcuCCGCGCU----UCUUA--AUGG---CGGc -5'
24696 5' -54.1 NC_005264.1 + 23993 0.67 0.946599
Target:  5'- -gGGGAGGUG-GAuGAGgcggGCCGCUGa -3'
miRNA:   3'- ggUCCUCCGCgCUuCUUaa--UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 25167 0.7 0.852725
Target:  5'- gCAGGGGGUgGCGggGcaagaaagaaaucuGAggGCCGCCc -3'
miRNA:   3'- gGUCCUCCG-CGCuuC--------------UUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 26382 0.72 0.729949
Target:  5'- -gAGGAGuCGCGAGGAgaagcaagccGUaGCCGCCGa -3'
miRNA:   3'- ggUCCUCcGCGCUUCU----------UAaUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.