miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 29193 0.67 0.95483
Target:  5'- cCCAGGuGGCGUGcAAGuGUUGCgugCGUCa -3'
miRNA:   3'- -GGUCCuCCGCGC-UUCuUAAUG---GCGGc -5'
24696 5' -54.1 NC_005264.1 + 31519 0.7 0.83912
Target:  5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3'
miRNA:   3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5'
24696 5' -54.1 NC_005264.1 + 35983 0.7 0.847191
Target:  5'- -gAGGGGGCGCGGAGAGcgaaACgCGCa- -3'
miRNA:   3'- ggUCCUCCGCGCUUCUUaa--UG-GCGgc -5'
24696 5' -54.1 NC_005264.1 + 36798 0.69 0.8845
Target:  5'- -aAGGGGGUacUGGAGAGgaGCCGCCGc -3'
miRNA:   3'- ggUCCUCCGc-GCUUCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 37260 0.72 0.749411
Target:  5'- uCCAGGAuacuugGGCGCGA-----UGCCGCCc -3'
miRNA:   3'- -GGUCCU------CCGCGCUucuuaAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 37573 0.69 0.891313
Target:  5'- gCCGcGGAGG-GCGAAGAAcaaguCgCGCCGa -3'
miRNA:   3'- -GGU-CCUCCgCGCUUCUUaau--G-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 37787 0.68 0.921916
Target:  5'- aCucGAGGCgagcgGCGGAGAAgaggcgcGCCGCCGa -3'
miRNA:   3'- gGucCUCCG-----CGCUUCUUaa-----UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 39812 0.72 0.749411
Target:  5'- cCCuGGuGG-GCGAGGAGgcaugUGCCGCCc -3'
miRNA:   3'- -GGuCCuCCgCGCUUCUUa----AUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 40804 0.78 0.424972
Target:  5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3'
miRNA:   3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 43893 0.7 0.837483
Target:  5'- -aAGGGGGCGcCGGAGAcgauagcgcgGCCGUCGc -3'
miRNA:   3'- ggUCCUCCGC-GCUUCUuaa-------UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 44301 0.65 0.973981
Target:  5'- gCGGGAgagaagcguGGUGCGAAGcuugcugaacgcaGA--ACCGCCGa -3'
miRNA:   3'- gGUCCU---------CCGCGCUUC-------------UUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 45037 0.69 0.891313
Target:  5'- gCAGGAuggacGGCGaCGAGGA--UGCCGCg- -3'
miRNA:   3'- gGUCCU-----CCGC-GCUUCUuaAUGGCGgc -5'
24696 5' -54.1 NC_005264.1 + 46260 0.67 0.95483
Target:  5'- gCCuGGGGGCGUuuAGGGg--UCGCCGa -3'
miRNA:   3'- -GGuCCUCCGCGcuUCUUaauGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 52065 0.66 0.968612
Target:  5'- aCCuGGcuuuGGCGCGAAaGAA--GCUGCUGu -3'
miRNA:   3'- -GGuCCu---CCGCGCUU-CUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 52674 0.69 0.8979
Target:  5'- gCCAGGAuaGGCcccaaagccGCGgcGggUUucGCCGCCc -3'
miRNA:   3'- -GGUCCU--CCG---------CGCuuCuuAA--UGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 53121 0.66 0.961463
Target:  5'- gCgAGGGGGC-CGAGGAGgccgggcaauCUGCCGc -3'
miRNA:   3'- -GgUCCUCCGcGCUUCUUaau-------GGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 54438 0.73 0.690088
Target:  5'- aCAugcuGGCGCGggGGAUgcccACCGCCGa -3'
miRNA:   3'- gGUccu-CCGCGCuuCUUAa---UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 59797 0.69 0.870209
Target:  5'- gCAGGGGGCGCGuAGcgcaccaUGCuUGCCGg -3'
miRNA:   3'- gGUCCUCCGCGCuUCuua----AUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 65463 0.66 0.958604
Target:  5'- cCCuGGGGGCuuuUGggGGAUacGCCGCUGc -3'
miRNA:   3'- -GGuCCUCCGc--GCuuCUUAa-UGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 66777 0.67 0.95483
Target:  5'- aCAGGccGCGCGAAGG----UCGCCu -3'
miRNA:   3'- gGUCCucCGCGCUUCUuaauGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.