Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24696 | 5' | -54.1 | NC_005264.1 | + | 159830 | 0.78 | 0.424972 |
Target: 5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3' miRNA: 3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 159069 | 0.69 | 0.8979 |
Target: 5'- gUCAGGuGGUGCaAGGAAgccuugcguCCGCCGu -3' miRNA: 3'- -GGUCCuCCGCGcUUCUUaau------GGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 158838 | 0.72 | 0.749411 |
Target: 5'- cCCuGGuGG-GCGAGGAGgcaugUGCCGCCc -3' miRNA: 3'- -GGuCCuCCgCGCUUCUUa----AUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 155824 | 0.69 | 0.8845 |
Target: 5'- -aAGGGGGUacUGGAGAGgaGCCGCCGc -3' miRNA: 3'- ggUCCUCCGc-GCUUCUUaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 150546 | 0.7 | 0.83912 |
Target: 5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3' miRNA: 3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 147543 | 0.72 | 0.729949 |
Target: 5'- --cGGAaucuuucccgcGGCGCGAAGug--GCCGCCGa -3' miRNA: 3'- gguCCU-----------CCGCGCUUCuuaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 146822 | 0.69 | 0.8845 |
Target: 5'- gCAcGGAGGCGCGgcGGucGUcGCCuGCCa -3' miRNA: 3'- gGU-CCUCCGCGCuuCU--UAaUGG-CGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 145159 | 0.69 | 0.891313 |
Target: 5'- gCCAGcGGcugacgagccGGCGUGAcucuGAGUUGCCGCUa -3' miRNA: 3'- -GGUC-CU----------CCGCGCUu---CUUAAUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 142451 | 0.67 | 0.95483 |
Target: 5'- uCguGGuuGCGgGggGAAUUACUGCg- -3' miRNA: 3'- -GguCCucCGCgCuuCUUAAUGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 140054 | 0.66 | 0.971528 |
Target: 5'- aCAGG-GGCGUGAGcAGUgucGCCGCg- -3' miRNA: 3'- gGUCCuCCGCGCUUcUUAa--UGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 138905 | 0.72 | 0.739727 |
Target: 5'- cCCAuccGGcGGCGCGAccAGA---ACCGCCGa -3' miRNA: 3'- -GGU---CCuCCGCGCU--UCUuaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 137856 | 0.66 | 0.962156 |
Target: 5'- gCAGGGGGUaCGggGAca-ACCGCa- -3' miRNA: 3'- gGUCCUCCGcGCuuCUuaaUGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 135943 | 0.66 | 0.96549 |
Target: 5'- aCAGGcggccGGGgGCGAGcGAAUUacucgcACUGCCGc -3' miRNA: 3'- gGUCC-----UCCgCGCUU-CUUAA------UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 133735 | 0.73 | 0.689079 |
Target: 5'- cUCGGGGGGUuCGAGGAcgUguucgucauucgcACCGCCGa -3' miRNA: 3'- -GGUCCUCCGcGCUUCUuaA-------------UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 132604 | 0.66 | 0.968612 |
Target: 5'- aCCGGGgaaGGGCGgaaCGAAGAcgggACCGgCGa -3' miRNA: 3'- -GGUCC---UCCGC---GCUUCUuaa-UGGCgGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 132359 | 0.69 | 0.873863 |
Target: 5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3' miRNA: 3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 132313 | 0.72 | 0.762793 |
Target: 5'- gCCAGcGAGGCGggucguggagcucccCGGAGGAcgGCCGCgCGg -3' miRNA: 3'- -GGUC-CUCCGC---------------GCUUCUUaaUGGCG-GC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 131988 | 0.71 | 0.777809 |
Target: 5'- aCCGGGcGGCGCGcc-----GCCGCCGa -3' miRNA: 3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 131575 | 0.77 | 0.469547 |
Target: 5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3' miRNA: 3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 129574 | 0.67 | 0.942136 |
Target: 5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3' miRNA: 3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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