miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24696 5' -54.1 NC_005264.1 + 122616 1.1 0.004517
Target:  5'- gCCAGGAGGCGCGAAGAAUUACCGCCGc -3'
miRNA:   3'- -GGUCCUCCGCGCUUCUUAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 37573 0.69 0.891313
Target:  5'- gCCGcGGAGG-GCGAAGAAcaaguCgCGCCGa -3'
miRNA:   3'- -GGU-CCUCCgCGCUUCUUaau--G-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 52674 0.69 0.8979
Target:  5'- gCCAGGAuaGGCcccaaagccGCGgcGggUUucGCCGCCc -3'
miRNA:   3'- -GGUCCU--CCG---------CGCuuCuuAA--UGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 20014 0.66 0.971528
Target:  5'- uCCGGuuGGCGCGAuuguGGAGUccUACCaugGCCu -3'
miRNA:   3'- -GGUCcuCCGCGCU----UCUUA--AUGG---CGGc -5'
24696 5' -54.1 NC_005264.1 + 122642 0.73 0.700148
Target:  5'- gCGGGGGGcCGCGAGGGcggGCgCGCUGa -3'
miRNA:   3'- gGUCCUCC-GCGCUUCUuaaUG-GCGGC- -5'
24696 5' -54.1 NC_005264.1 + 26382 0.72 0.729949
Target:  5'- -gAGGAGuCGCGAGGAgaagcaagccGUaGCCGCCGa -3'
miRNA:   3'- ggUCCUCcGCGCUUCU----------UAaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 37260 0.72 0.749411
Target:  5'- uCCAGGAuacuugGGCGCGA-----UGCCGCCc -3'
miRNA:   3'- -GGUCCU------CCGCGCUucuuaAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 158838 0.72 0.749411
Target:  5'- cCCuGGuGG-GCGAGGAGgcaugUGCCGCCc -3'
miRNA:   3'- -GGuCCuCCgCGCUUCUUa----AUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 150546 0.7 0.83912
Target:  5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3'
miRNA:   3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5'
24696 5' -54.1 NC_005264.1 + 155824 0.69 0.8845
Target:  5'- -aAGGGGGUacUGGAGAGgaGCCGCCGc -3'
miRNA:   3'- ggUCCUCCGc-GCUUCUUaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 25167 0.7 0.852725
Target:  5'- gCAGGGGGUgGCGggGcaagaaagaaaucuGAggGCCGCCc -3'
miRNA:   3'- gGUCCUCCG-CGCuuC--------------UUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 131988 0.71 0.777809
Target:  5'- aCCGGGcGGCGCGcc-----GCCGCCGa -3'
miRNA:   3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 159830 0.78 0.424972
Target:  5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3'
miRNA:   3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 122499 0.7 0.855067
Target:  5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3'
miRNA:   3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 131575 0.77 0.469547
Target:  5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3'
miRNA:   3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5'
24696 5' -54.1 NC_005264.1 + 132313 0.72 0.762793
Target:  5'- gCCAGcGAGGCGggucguggagcucccCGGAGGAcgGCCGCgCGg -3'
miRNA:   3'- -GGUC-CUCCGC---------------GCUUCUUaaUGGCG-GC- -5'
24696 5' -54.1 NC_005264.1 + 132359 0.69 0.873863
Target:  5'- gCAGGAggagaggGGCGCGAGGAugaacgucgggGCCgaGCCGg -3'
miRNA:   3'- gGUCCU-------CCGCGCUUCUuaa--------UGG--CGGC- -5'
24696 5' -54.1 NC_005264.1 + 145159 0.69 0.891313
Target:  5'- gCCAGcGGcugacgagccGGCGUGAcucuGAGUUGCCGCUa -3'
miRNA:   3'- -GGUC-CU----------CCGCGCUu---CUUAAUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 106739 0.75 0.56802
Target:  5'- -aAGGAuGGUGCGggGGA--GCCGCCu -3'
miRNA:   3'- ggUCCU-CCGCGCuuCUUaaUGGCGGc -5'
24696 5' -54.1 NC_005264.1 + 147543 0.72 0.729949
Target:  5'- --cGGAaucuuucccgcGGCGCGAAGug--GCCGCCGa -3'
miRNA:   3'- gguCCU-----------CCGCGCUUCuuaaUGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.