Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24696 | 5' | -54.1 | NC_005264.1 | + | 52674 | 0.69 | 0.8979 |
Target: 5'- gCCAGGAuaGGCcccaaagccGCGgcGggUUucGCCGCCc -3' miRNA: 3'- -GGUCCU--CCG---------CGCuuCuuAA--UGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 106739 | 0.75 | 0.56802 |
Target: 5'- -aAGGAuGGUGCGggGGA--GCCGCCu -3' miRNA: 3'- ggUCCU-CCGCGCuuCUUaaUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 135943 | 0.66 | 0.96549 |
Target: 5'- aCAGGcggccGGGgGCGAGcGAAUUacucgcACUGCCGc -3' miRNA: 3'- gGUCC-----UCCgCGCUU-CUUAA------UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 84320 | 0.67 | 0.942136 |
Target: 5'- aCCGGGcacGGCGCGAu-GGUUACUgGCCu -3' miRNA: 3'- -GGUCCu--CCGCGCUucUUAAUGG-CGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 37573 | 0.69 | 0.891313 |
Target: 5'- gCCGcGGAGG-GCGAAGAAcaaguCgCGCCGa -3' miRNA: 3'- -GGU-CCUCCgCGCUUCUUaau--G-GCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 131575 | 0.77 | 0.469547 |
Target: 5'- gCGGGGGGCguucgccGCGAAGA--UACCGCUGa -3' miRNA: 3'- gGUCCUCCG-------CGCUUCUuaAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 125160 | 0.68 | 0.932502 |
Target: 5'- gCGGGAGG-GCGAGG----GCCGCgCGc -3' miRNA: 3'- gGUCCUCCgCGCUUCuuaaUGGCG-GC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 159830 | 0.78 | 0.424972 |
Target: 5'- gCGGGGGGCGCuGGAuGAUUAgCGCCGg -3' miRNA: 3'- gGUCCUCCGCG-CUUcUUAAUgGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 122616 | 1.1 | 0.004517 |
Target: 5'- gCCAGGAGGCGCGAAGAAUUACCGCCGc -3' miRNA: 3'- -GGUCCUCCGCGCUUCUUAAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 131988 | 0.71 | 0.777809 |
Target: 5'- aCCGGGcGGCGCGcc-----GCCGCCGa -3' miRNA: 3'- -GGUCCuCCGCGCuucuuaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 145159 | 0.69 | 0.891313 |
Target: 5'- gCCAGcGGcugacgagccGGCGUGAcucuGAGUUGCCGCUa -3' miRNA: 3'- -GGUC-CU----------CCGCGCUu---CUUAAUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 19416 | 0.68 | 0.927328 |
Target: 5'- -gGGGAGGCgagGCGccGggUgugGCCGCgGg -3' miRNA: 3'- ggUCCUCCG---CGCuuCuuAa--UGGCGgC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 122499 | 0.7 | 0.855067 |
Target: 5'- --cGGGGGCGau-GGGcUUGCCGCCGc -3' miRNA: 3'- gguCCUCCGCgcuUCUuAAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 150546 | 0.7 | 0.83912 |
Target: 5'- uCCAGGcucGGGCGgGGAGG---GCCGuuGg -3' miRNA: 3'- -GGUCC---UCCGCgCUUCUuaaUGGCggC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 37260 | 0.72 | 0.749411 |
Target: 5'- uCCAGGAuacuugGGCGCGA-----UGCCGCCc -3' miRNA: 3'- -GGUCCU------CCGCGCUucuuaAUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 122642 | 0.73 | 0.700148 |
Target: 5'- gCGGGGGGcCGCGAGGGcggGCgCGCUGa -3' miRNA: 3'- gGUCCUCC-GCGCUUCUuaaUG-GCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 52065 | 0.66 | 0.968612 |
Target: 5'- aCCuGGcuuuGGCGCGAAaGAA--GCUGCUGu -3' miRNA: 3'- -GGuCCu---CCGCGCUU-CUUaaUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 122756 | 0.66 | 0.96549 |
Target: 5'- aCgAGGAaGaCGaCGAGGAGcggggccucUUGCCGCCGg -3' miRNA: 3'- -GgUCCUcC-GC-GCUUCUU---------AAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 95362 | 0.67 | 0.942136 |
Target: 5'- aCGGGcGGCGCG------UGCCGCCa -3' miRNA: 3'- gGUCCuCCGCGCuucuuaAUGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 129574 | 0.67 | 0.942136 |
Target: 5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3' miRNA: 3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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