Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24696 | 5' | -54.1 | NC_005264.1 | + | 101404 | 0.67 | 0.937438 |
Target: 5'- -----cGGCGcCGAGGAGcggGCCGCCGa -3' miRNA: 3'- gguccuCCGC-GCUUCUUaa-UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 66777 | 0.67 | 0.95483 |
Target: 5'- aCAGGccGCGCGAAGG----UCGCCu -3' miRNA: 3'- gGUCCucCGCGCUUCUuaauGGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 46260 | 0.67 | 0.95483 |
Target: 5'- gCCuGGGGGCGUuuAGGGg--UCGCCGa -3' miRNA: 3'- -GGuCCUCCGCGcuUCUUaauGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 29193 | 0.67 | 0.95483 |
Target: 5'- cCCAGGuGGCGUGcAAGuGUUGCgugCGUCa -3' miRNA: 3'- -GGUCCuCCGCGC-UUCuUAAUG---GCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 111727 | 0.67 | 0.95483 |
Target: 5'- gCCAGcgucGAGGCGCGAGcag--ACCGCa- -3' miRNA: 3'- -GGUC----CUCCGCGCUUcuuaaUGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 94531 | 0.67 | 0.95083 |
Target: 5'- -uGGGAGGgcaGCGGcgccgcacugAGAAaUGCCGCUGg -3' miRNA: 3'- ggUCCUCCg--CGCU----------UCUUaAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 90649 | 0.67 | 0.946599 |
Target: 5'- -aAGGGcGCGCGGAGAccgcAUUGCUGgCGg -3' miRNA: 3'- ggUCCUcCGCGCUUCU----UAAUGGCgGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 10547 | 0.67 | 0.942136 |
Target: 5'- cUCAGG-GGCGCGGAucgcGcGUUcGCCGCUGc -3' miRNA: 3'- -GGUCCuCCGCGCUU----CuUAA-UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 109632 | 0.67 | 0.939345 |
Target: 5'- gCGGGGGGCGCGAcGGuugcaacucgcgGCC-CCGg -3' miRNA: 3'- gGUCCUCCGCGCUuCUuaa---------UGGcGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 70630 | 0.67 | 0.95483 |
Target: 5'- gCCAGGAGGaaCGUGggGA-----CGCCa -3' miRNA: 3'- -GGUCCUCC--GCGCuuCUuaaugGCGGc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 76502 | 0.67 | 0.95483 |
Target: 5'- gUCGGGGGGaauagGCGAccgucUACCGCCGc -3' miRNA: 3'- -GGUCCUCCg----CGCUucuuaAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 117839 | 0.66 | 0.958604 |
Target: 5'- -gGGGAGGCGCGGcGGAGUg--CGCa- -3' miRNA: 3'- ggUCCUCCGCGCU-UCUUAaugGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 120045 | 0.65 | 0.973981 |
Target: 5'- cUCAGGGGGUcuaGCGggGGGgaaguagguggcggaCGCCGg -3' miRNA: 3'- -GGUCCUCCG---CGCuuCUUaaug-----------GCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 140054 | 0.66 | 0.971528 |
Target: 5'- aCAGG-GGCGUGAGcAGUgucGCCGCg- -3' miRNA: 3'- gGUCCuCCGCGCUUcUUAa--UGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 13577 | 0.66 | 0.968612 |
Target: 5'- aCCGGGgaaGGGCGgaaCGAAGAcgggACCGgCGa -3' miRNA: 3'- -GGUCC---UCCGC---GCUUCUuaa-UGGCgGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 3730 | 0.66 | 0.96549 |
Target: 5'- aCgAGGAaGaCGaCGAGGAGcggggccucUUGCCGCCGg -3' miRNA: 3'- -GgUCCUcC-GC-GCUUCUU---------AAUGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 137856 | 0.66 | 0.962156 |
Target: 5'- gCAGGGGGUaCGggGAca-ACCGCa- -3' miRNA: 3'- gGUCCUCCGcGCuuCUuaaUGGCGgc -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 53121 | 0.66 | 0.961463 |
Target: 5'- gCgAGGGGGC-CGAGGAGgccgggcaauCUGCCGc -3' miRNA: 3'- -GgUCCUCCGcGCUUCUUaau-------GGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 65463 | 0.66 | 0.958604 |
Target: 5'- cCCuGGGGGCuuuUGggGGAUacGCCGCUGc -3' miRNA: 3'- -GGuCCUCCGc--GCuuCUUAa-UGGCGGC- -5' |
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24696 | 5' | -54.1 | NC_005264.1 | + | 125930 | 0.66 | 0.958604 |
Target: 5'- gCCAGaGcAGGCGaCGAGGAAUuaaUACCuGUCu -3' miRNA: 3'- -GGUC-C-UCCGC-GCUUCUUA---AUGG-CGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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