Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24697 | 5' | -53.8 | NC_005264.1 | + | 77952 | 0.66 | 0.970992 |
Target: 5'- cGUCcuGCGCGGcCCGCUaUGUCuuauguCGAUGg -3' miRNA: 3'- -CGGuuUGUGCC-GGCGA-ACAGc-----GCUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 16174 | 0.66 | 0.970992 |
Target: 5'- cGCCcuGCGCGGagGUcgGUCGCGGc- -3' miRNA: 3'- -CGGuuUGUGCCggCGaaCAGCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 156007 | 0.66 | 0.970992 |
Target: 5'- aCCAGcaagguacGCcCGGCgaCGCUUG-CGCGGUGg -3' miRNA: 3'- cGGUU--------UGuGCCG--GCGAACaGCGCUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 74096 | 0.66 | 0.970992 |
Target: 5'- gGUCGuacauGGCGCGGUCGacgcUGUCGCGGcUGg -3' miRNA: 3'- -CGGU-----UUGUGCCGGCga--ACAGCGCU-AC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 106335 | 0.66 | 0.970992 |
Target: 5'- cGCCGAugAuauuuucugaCuGCCGCUUGgCGCGGUu -3' miRNA: 3'- -CGGUUugU----------GcCGGCGAACaGCGCUAc -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 13030 | 0.66 | 0.970703 |
Target: 5'- cGCgGGACccuACGGCCGCUcgucugcUGUCGUu-UGg -3' miRNA: 3'- -CGgUUUG---UGCCGGCGA-------ACAGCGcuAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 151096 | 0.66 | 0.968007 |
Target: 5'- cGCCAGACgACGuGauGUUUGUCGCcAUGu -3' miRNA: 3'- -CGGUUUG-UGC-CggCGAACAGCGcUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 48684 | 0.66 | 0.968007 |
Target: 5'- uCUggGCGCGaGuCUGCUcGUCGCGGUc -3' miRNA: 3'- cGGuuUGUGC-C-GGCGAaCAGCGCUAc -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 8381 | 0.66 | 0.96707 |
Target: 5'- cGCCGGACGCGGCgCGUUgaagcugccggagcUGUUGUugucgagguuGAUGc -3' miRNA: 3'- -CGGUUUGUGCCG-GCGA--------------ACAGCG----------CUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 127408 | 0.66 | 0.96707 |
Target: 5'- cGCCGGACGCGGCgCGUUgaagcugccggagcUGUUGUugucgagguuGAUGc -3' miRNA: 3'- -CGGUUUGUGCCG-GCGA--------------ACAGCG----------CUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 159173 | 0.66 | 0.96481 |
Target: 5'- cGCCGAG-ACGGCCGCccaUCGuCGAg- -3' miRNA: 3'- -CGGUUUgUGCCGGCGaacAGC-GCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 9339 | 0.66 | 0.96481 |
Target: 5'- cGCCAGGgGCGGCCGCcguuUUGcCGgcaGAg- -3' miRNA: 3'- -CGGUUUgUGCCGGCG----AACaGCg--CUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 156409 | 0.66 | 0.96481 |
Target: 5'- cGCCAgcGACGCcGCCGCgagagUGUaCGUGGa- -3' miRNA: 3'- -CGGU--UUGUGcCGGCGa----ACA-GCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 49809 | 0.66 | 0.96481 |
Target: 5'- cGUCGAgguGCAgGGCCGCguauucuuuuUUGUgCGCGAg- -3' miRNA: 3'- -CGGUU---UGUgCCGGCG----------AACA-GCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 37382 | 0.66 | 0.96481 |
Target: 5'- cGCCAgcGACGCcGCCGCgagagUGUaCGUGGa- -3' miRNA: 3'- -CGGU--UUGUGcCGGCGa----ACA-GCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 57868 | 0.66 | 0.96481 |
Target: 5'- cGCCAGagacggcgGCACGGCgGCcaUGgCGCgGAUGa -3' miRNA: 3'- -CGGUU--------UGUGCCGgCGa-ACaGCG-CUAC- -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 138547 | 0.66 | 0.96481 |
Target: 5'- aGCC--ACAgaGGCCGCcgUGuUCGCGAa- -3' miRNA: 3'- -CGGuuUGUg-CCGGCGa-AC-AGCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 40146 | 0.66 | 0.96481 |
Target: 5'- cGCCGAG-ACGGCCGCccaUCGuCGAg- -3' miRNA: 3'- -CGGUUUgUGCCGGCGaacAGC-GCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 71819 | 0.66 | 0.961395 |
Target: 5'- gGCCgAAGC-CGcCCGCgggGUCGCGAa- -3' miRNA: 3'- -CGG-UUUGuGCcGGCGaa-CAGCGCUac -5' |
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24697 | 5' | -53.8 | NC_005264.1 | + | 3794 | 0.66 | 0.957757 |
Target: 5'- -aCGAACugGGCgGU-UGUUGCGAg- -3' miRNA: 3'- cgGUUUGugCCGgCGaACAGCGCUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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