miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 4495 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 123522 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 43201 0.66 0.909377
Target:  5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 145109 0.66 0.909377
Target:  5'- --gCAUAGGuuGcGCCGcGGcGCGCAGg -3'
miRNA:   3'- cuaGUGUUCggCuCGGC-CCuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 84894 0.66 0.909377
Target:  5'- ---aGCGGGCCGcGCaggaCGGGAGgGCGGg -3'
miRNA:   3'- cuagUGUUCGGCuCG----GCCCUUgCGUC- -5'
24699 3' -56.1 NC_005264.1 + 162228 0.66 0.909377
Target:  5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 50654 0.66 0.909377
Target:  5'- aGUCGCGgcucugugaguAGuuaCCGAGCCGGGAGgcguuaGCAGu -3'
miRNA:   3'- cUAGUGU-----------UC---GGCUCGGCCCUUg-----CGUC- -5'
24699 3' -56.1 NC_005264.1 + 84141 0.66 0.90321
Target:  5'- -cUCGCGAGCC---CCGGGAAgugguCGCAGc -3'
miRNA:   3'- cuAGUGUUCGGcucGGCCCUU-----GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 145069 0.66 0.90321
Target:  5'- --cUAgAAGCCGGGCCGGGca-GCu- -3'
miRNA:   3'- cuaGUgUUCGGCUCGGCCCuugCGuc -5'
24699 3' -56.1 NC_005264.1 + 20252 0.66 0.90321
Target:  5'- cGUCGC-GGCCG-GCauucaGGGGACGguGc -3'
miRNA:   3'- cUAGUGuUCGGCuCGg----CCCUUGCguC- -5'
24699 3' -56.1 NC_005264.1 + 20506 0.66 0.896811
Target:  5'- cGGUCGCugcGCCGAgaaGCCaGGGGcACGCGu -3'
miRNA:   3'- -CUAGUGuu-CGGCU---CGG-CCCU-UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 127653 0.66 0.896811
Target:  5'- --gCGCuAGaCGGGCUGGGGACGCc- -3'
miRNA:   3'- cuaGUGuUCgGCUCGGCCCUUGCGuc -5'
24699 3' -56.1 NC_005264.1 + 80346 0.66 0.896811
Target:  5'- --gCGCGGGUCGGGUCGGuuGGAgGCGGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGGCC--CUUgCGUC- -5'
24699 3' -56.1 NC_005264.1 + 19417 0.66 0.896811
Target:  5'- gGGagGCGAggcGCCGgguguGGCCGcGGGGCGCGGg -3'
miRNA:   3'- -CUagUGUU---CGGC-----UCGGC-CCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 141483 0.66 0.890182
Target:  5'- --cCACcGGCCGAGgcggcCCGGGAcgaacggcaGCGCAa -3'
miRNA:   3'- cuaGUGuUCGGCUC-----GGCCCU---------UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 144848 0.66 0.890182
Target:  5'- cGUCA-GAGCCGGuGCCGGcuuuGAACGCGc -3'
miRNA:   3'- cUAGUgUUCGGCU-CGGCC----CUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 68431 0.67 0.883325
Target:  5'- cGAUCGCGcAGuCCGcGCCGcGGucugcGCGCGGa -3'
miRNA:   3'- -CUAGUGU-UC-GGCuCGGC-CCu----UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 108143 0.67 0.876247
Target:  5'- gGAUCGgggggccguCGAGCCucGCgGGGAGCGUAa -3'
miRNA:   3'- -CUAGU---------GUUCGGcuCGgCCCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 162174 0.67 0.876247
Target:  5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 122836 0.67 0.876247
Target:  5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3'
miRNA:   3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.