Results 1 - 20 of 56 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 4495 | 0.66 | 0.915308 |
Target: 5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3' miRNA: 3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 20506 | 0.66 | 0.896811 |
Target: 5'- cGGUCGCugcGCCGAgaaGCCaGGGGcACGCGu -3' miRNA: 3'- -CUAGUGuu-CGGCU---CGG-CCCU-UGCGUc -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 123522 | 0.66 | 0.915308 |
Target: 5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3' miRNA: 3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 80346 | 0.66 | 0.896811 |
Target: 5'- --gCGCGGGUCGGGUCGGuuGGAgGCGGu -3' miRNA: 3'- cuaGUGUUCGGCUCGGCC--CUUgCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 84894 | 0.66 | 0.909377 |
Target: 5'- ---aGCGGGCCGcGCaggaCGGGAGgGCGGg -3' miRNA: 3'- cuagUGUUCGGCuCG----GCCCUUgCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 162228 | 0.66 | 0.909377 |
Target: 5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3' miRNA: 3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 84141 | 0.66 | 0.90321 |
Target: 5'- -cUCGCGAGCC---CCGGGAAgugguCGCAGc -3' miRNA: 3'- cuAGUGUUCGGcucGGCCCUU-----GCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 19417 | 0.66 | 0.896811 |
Target: 5'- gGGagGCGAggcGCCGgguguGGCCGcGGGGCGCGGg -3' miRNA: 3'- -CUagUGUU---CGGC-----UCGGC-CCUUGCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 141483 | 0.66 | 0.890182 |
Target: 5'- --cCACcGGCCGAGgcggcCCGGGAcgaacggcaGCGCAa -3' miRNA: 3'- cuaGUGuUCGGCUC-----GGCCCU---------UGCGUc -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 50654 | 0.66 | 0.909377 |
Target: 5'- aGUCGCGgcucugugaguAGuuaCCGAGCCGGGAGgcguuaGCAGu -3' miRNA: 3'- cUAGUGU-----------UC---GGCUCGGCCCUUg-----CGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 43201 | 0.66 | 0.909377 |
Target: 5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3' miRNA: 3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 145109 | 0.66 | 0.909377 |
Target: 5'- --gCAUAGGuuGcGCCGcGGcGCGCAGg -3' miRNA: 3'- cuaGUGUUCggCuCGGC-CCuUGCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 145069 | 0.66 | 0.90321 |
Target: 5'- --cUAgAAGCCGGGCCGGGca-GCu- -3' miRNA: 3'- cuaGUgUUCGGCUCGGCCCuugCGuc -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 144848 | 0.66 | 0.890182 |
Target: 5'- cGUCA-GAGCCGGuGCCGGcuuuGAACGCGc -3' miRNA: 3'- cUAGUgUUCGGCU-CGGCC----CUUGCGUc -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 20252 | 0.66 | 0.90321 |
Target: 5'- cGUCGC-GGCCG-GCauucaGGGGACGguGc -3' miRNA: 3'- cUAGUGuUCGGCuCGg----CCCUUGCguC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 127653 | 0.66 | 0.896811 |
Target: 5'- --gCGCuAGaCGGGCUGGGGACGCc- -3' miRNA: 3'- cuaGUGuUCgGCUCGGCCCUUGCGuc -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 116405 | 0.67 | 0.861442 |
Target: 5'- --cCGCAGGCCGAcGUCG--AGCGCAGg -3' miRNA: 3'- cuaGUGUUCGGCU-CGGCccUUGCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 11873 | 0.67 | 0.868209 |
Target: 5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3' miRNA: 3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 43147 | 0.67 | 0.876247 |
Target: 5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3' miRNA: 3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5' |
|||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 34180 | 0.67 | 0.868209 |
Target: 5'- aGUCACAgcugcuggacagcAGCCGcGGCauGGAGCGCAu -3' miRNA: 3'- cUAGUGU-------------UCGGC-UCGgcCCUUGCGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home