miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 123595 1.09 0.002871
Target:  5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3'
miRNA:   3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 4568 1.09 0.002871
Target:  5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3'
miRNA:   3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 140540 0.76 0.397209
Target:  5'- uGUCugAGGCgCG-GCUGGGAugGCAGa -3'
miRNA:   3'- cUAGugUUCG-GCuCGGCCCUugCGUC- -5'
24699 3' -56.1 NC_005264.1 + 132386 0.75 0.432048
Target:  5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3'
miRNA:   3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 13359 0.75 0.432048
Target:  5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3'
miRNA:   3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 30100 0.74 0.497041
Target:  5'- aAUCGCGAGUCGAGaugCGGGcGGCGCGGc -3'
miRNA:   3'- cUAGUGUUCGGCUCg--GCCC-UUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 75106 0.72 0.616868
Target:  5'- --gCGCcggcGCCGAGCUGGG-GCGCAGu -3'
miRNA:   3'- cuaGUGuu--CGGCUCGGCCCuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 101345 0.71 0.637318
Target:  5'- --gCGCuAGCCGAGaCCGcGGGGCGCGu -3'
miRNA:   3'- cuaGUGuUCGGCUC-GGC-CCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 62548 0.71 0.66794
Target:  5'- aGAUCccgguuccaGCAAGCCGAGCCcGcuGCGCGGa -3'
miRNA:   3'- -CUAG---------UGUUCGGCUCGGcCcuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 124137 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 5110 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 97218 0.7 0.688223
Target:  5'- cGcgCGCGGGUacccaCGAGCCGcGAACGCAGc -3'
miRNA:   3'- -CuaGUGUUCG-----GCUCGGCcCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 2615 0.7 0.708321
Target:  5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5'
24699 3' -56.1 NC_005264.1 + 121642 0.7 0.708321
Target:  5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5'
24699 3' -56.1 NC_005264.1 + 41420 0.7 0.737961
Target:  5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3'
miRNA:   3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 160447 0.7 0.737961
Target:  5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3'
miRNA:   3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 86468 0.68 0.79451
Target:  5'- --gCAgGAGCUGAGCCaGGAGCaGUGGg -3'
miRNA:   3'- cuaGUgUUCGGCUCGGcCCUUG-CGUC- -5'
24699 3' -56.1 NC_005264.1 + 136511 0.68 0.803474
Target:  5'- aGGUCAUAgcuaGGuCCGAGaCCGGaGAcgACGCGGa -3'
miRNA:   3'- -CUAGUGU----UC-GGCUC-GGCC-CU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 155928 0.68 0.803474
Target:  5'- aAUCGCGcccacggaaAGCCGcgcGCUGGGAcuGCGCGGc -3'
miRNA:   3'- cUAGUGU---------UCGGCu--CGGCCCU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 38849 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.