miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 43147 0.67 0.876247
Target:  5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 162174 0.67 0.876247
Target:  5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 34180 0.67 0.868209
Target:  5'- aGUCACAgcugcuggacagcAGCCGcGGCauGGAGCGCAu -3'
miRNA:   3'- cUAGUGU-------------UCGGC-UCGgcCCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 130899 0.67 0.868209
Target:  5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3'
miRNA:   3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 11873 0.67 0.868209
Target:  5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3'
miRNA:   3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 27913 0.67 0.861442
Target:  5'- aGAUC---GGCCGAGCUccuGGGGACgaGCAGu -3'
miRNA:   3'- -CUAGuguUCGGCUCGG---CCCUUG--CGUC- -5'
24699 3' -56.1 NC_005264.1 + 116405 0.67 0.861442
Target:  5'- --cCGCAGGCCGAcGUCG--AGCGCAGg -3'
miRNA:   3'- cuaGUGUUCGGCU-CGGCccUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 24303 0.67 0.853726
Target:  5'- cGGUUACAuccacgguGCCGAGCguugaaGGGGcCGCAGu -3'
miRNA:   3'- -CUAGUGUu-------CGGCUCGg-----CCCUuGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 133946 0.67 0.853726
Target:  5'- cGGUgGgAAGCUuGGCCGGGGucuuCGCGGu -3'
miRNA:   3'- -CUAgUgUUCGGcUCGGCCCUu---GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 28011 0.68 0.837701
Target:  5'- cGAUC-CAGGUCG-GUCGGGGGCGgGa -3'
miRNA:   3'- -CUAGuGUUCGGCuCGGCCCUUGCgUc -5'
24699 3' -56.1 NC_005264.1 + 106012 0.68 0.837701
Target:  5'- --cCACGAGCCGcuAGCUaGGGccgccgcgcAGCGCAGg -3'
miRNA:   3'- cuaGUGUUCGGC--UCGG-CCC---------UUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 96525 0.68 0.829405
Target:  5'- aGAUCGCGA--UGAGUCaGGAugGCAGg -3'
miRNA:   3'- -CUAGUGUUcgGCUCGGcCCUugCGUC- -5'
24699 3' -56.1 NC_005264.1 + 38849 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 40954 0.68 0.82093
Target:  5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3'
miRNA:   3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 87629 0.68 0.82093
Target:  5'- --gCGCAgGGCCGAugcaGCCGcguGGGGCGCGGg -3'
miRNA:   3'- cuaGUGU-UCGGCU----CGGC---CCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 159981 0.68 0.82093
Target:  5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3'
miRNA:   3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 157875 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 155928 0.68 0.803474
Target:  5'- aAUCGCGcccacggaaAGCCGcgcGCUGGGAcuGCGCGGc -3'
miRNA:   3'- cUAGUGU---------UCGGCu--CGGCCCU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 136511 0.68 0.803474
Target:  5'- aGGUCAUAgcuaGGuCCGAGaCCGGaGAcgACGCGGa -3'
miRNA:   3'- -CUAGUGU----UC-GGCUC-GGCC-CU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 86468 0.68 0.79451
Target:  5'- --gCAgGAGCUGAGCCaGGAGCaGUGGg -3'
miRNA:   3'- cuaGUgUUCGGCUCGGcCCUUG-CGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.