miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 2615 0.7 0.708321
Target:  5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5'
24699 3' -56.1 NC_005264.1 + 3810 0.67 0.876247
Target:  5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3'
miRNA:   3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 4495 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 4568 1.09 0.002871
Target:  5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3'
miRNA:   3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 5110 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 11873 0.67 0.868209
Target:  5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3'
miRNA:   3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 13359 0.75 0.432048
Target:  5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3'
miRNA:   3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 19417 0.66 0.896811
Target:  5'- gGGagGCGAggcGCCGgguguGGCCGcGGGGCGCGGg -3'
miRNA:   3'- -CUagUGUU---CGGC-----UCGGC-CCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 20252 0.66 0.90321
Target:  5'- cGUCGC-GGCCG-GCauucaGGGGACGguGc -3'
miRNA:   3'- cUAGUGuUCGGCuCGg----CCCUUGCguC- -5'
24699 3' -56.1 NC_005264.1 + 20506 0.66 0.896811
Target:  5'- cGGUCGCugcGCCGAgaaGCCaGGGGcACGCGu -3'
miRNA:   3'- -CUAGUGuu-CGGCU---CGG-CCCU-UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 24303 0.67 0.853726
Target:  5'- cGGUUACAuccacgguGCCGAGCguugaaGGGGcCGCAGu -3'
miRNA:   3'- -CUAGUGUu-------CGGCUCGg-----CCCUuGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 27913 0.67 0.861442
Target:  5'- aGAUC---GGCCGAGCUccuGGGGACgaGCAGu -3'
miRNA:   3'- -CUAGuguUCGGCUCGG---CCCUUG--CGUC- -5'
24699 3' -56.1 NC_005264.1 + 28011 0.68 0.837701
Target:  5'- cGAUC-CAGGUCG-GUCGGGGGCGgGa -3'
miRNA:   3'- -CUAGuGUUCGGCuCGGCCCUUGCgUc -5'
24699 3' -56.1 NC_005264.1 + 30100 0.74 0.497041
Target:  5'- aAUCGCGAGUCGAGaugCGGGcGGCGCGGc -3'
miRNA:   3'- cUAGUGUUCGGCUCg--GCCC-UUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 34180 0.67 0.868209
Target:  5'- aGUCACAgcugcuggacagcAGCCGcGGCauGGAGCGCAu -3'
miRNA:   3'- cUAGUGU-------------UCGGC-UCGgcCCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 38849 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 40954 0.68 0.82093
Target:  5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3'
miRNA:   3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 41420 0.7 0.737961
Target:  5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3'
miRNA:   3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 43147 0.67 0.876247
Target:  5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 43201 0.66 0.909377
Target:  5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.