miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 50654 0.66 0.909377
Target:  5'- aGUCGCGgcucugugaguAGuuaCCGAGCCGGGAGgcguuaGCAGu -3'
miRNA:   3'- cUAGUGU-----------UC---GGCUCGGCCCUUg-----CGUC- -5'
24699 3' -56.1 NC_005264.1 + 62548 0.71 0.66794
Target:  5'- aGAUCccgguuccaGCAAGCCGAGCCcGcuGCGCGGa -3'
miRNA:   3'- -CUAG---------UGUUCGGCUCGGcCcuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 68431 0.67 0.883325
Target:  5'- cGAUCGCGcAGuCCGcGCCGcGGucugcGCGCGGa -3'
miRNA:   3'- -CUAGUGU-UC-GGCuCGGC-CCu----UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 75106 0.72 0.616868
Target:  5'- --gCGCcggcGCCGAGCUGGG-GCGCAGu -3'
miRNA:   3'- cuaGUGuu--CGGCUCGGCCCuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 80346 0.66 0.896811
Target:  5'- --gCGCGGGUCGGGUCGGuuGGAgGCGGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGGCC--CUUgCGUC- -5'
24699 3' -56.1 NC_005264.1 + 84141 0.66 0.90321
Target:  5'- -cUCGCGAGCC---CCGGGAAgugguCGCAGc -3'
miRNA:   3'- cuAGUGUUCGGcucGGCCCUU-----GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 84894 0.66 0.909377
Target:  5'- ---aGCGGGCCGcGCaggaCGGGAGgGCGGg -3'
miRNA:   3'- cuagUGUUCGGCuCG----GCCCUUgCGUC- -5'
24699 3' -56.1 NC_005264.1 + 86468 0.68 0.79451
Target:  5'- --gCAgGAGCUGAGCCaGGAGCaGUGGg -3'
miRNA:   3'- cuaGUgUUCGGCUCGGcCCUUG-CGUC- -5'
24699 3' -56.1 NC_005264.1 + 87629 0.68 0.82093
Target:  5'- --gCGCAgGGCCGAugcaGCCGcguGGGGCGCGGg -3'
miRNA:   3'- cuaGUGU-UCGGCU----CGGC---CCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 96525 0.68 0.829405
Target:  5'- aGAUCGCGA--UGAGUCaGGAugGCAGg -3'
miRNA:   3'- -CUAGUGUUcgGCUCGGcCCUugCGUC- -5'
24699 3' -56.1 NC_005264.1 + 97218 0.7 0.688223
Target:  5'- cGcgCGCGGGUacccaCGAGCCGcGAACGCAGc -3'
miRNA:   3'- -CuaGUGUUCG-----GCUCGGCcCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 101345 0.71 0.637318
Target:  5'- --gCGCuAGCCGAGaCCGcGGGGCGCGu -3'
miRNA:   3'- cuaGUGuUCGGCUC-GGC-CCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 106012 0.68 0.837701
Target:  5'- --cCACGAGCCGcuAGCUaGGGccgccgcgcAGCGCAGg -3'
miRNA:   3'- cuaGUGUUCGGC--UCGG-CCC---------UUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 108143 0.67 0.876247
Target:  5'- gGAUCGgggggccguCGAGCCucGCgGGGAGCGUAa -3'
miRNA:   3'- -CUAGU---------GUUCGGcuCGgCCCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 116405 0.67 0.861442
Target:  5'- --cCGCAGGCCGAcGUCG--AGCGCAGg -3'
miRNA:   3'- cuaGUGUUCGGCU-CGGCccUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 121642 0.7 0.708321
Target:  5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5'
24699 3' -56.1 NC_005264.1 + 122836 0.67 0.876247
Target:  5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3'
miRNA:   3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 123522 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 123595 1.09 0.002871
Target:  5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3'
miRNA:   3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 124137 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.