miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 162228 0.66 0.909377
Target:  5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 162174 0.67 0.876247
Target:  5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3'
miRNA:   3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5'
24699 3' -56.1 NC_005264.1 + 160447 0.7 0.737961
Target:  5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3'
miRNA:   3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 159981 0.68 0.82093
Target:  5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3'
miRNA:   3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 157875 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 155928 0.68 0.803474
Target:  5'- aAUCGCGcccacggaaAGCCGcgcGCUGGGAcuGCGCGGc -3'
miRNA:   3'- cUAGUGU---------UCGGCu--CGGCCCU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 145109 0.66 0.909377
Target:  5'- --gCAUAGGuuGcGCCGcGGcGCGCAGg -3'
miRNA:   3'- cuaGUGUUCggCuCGGC-CCuUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 145069 0.66 0.90321
Target:  5'- --cUAgAAGCCGGGCCGGGca-GCu- -3'
miRNA:   3'- cuaGUgUUCGGCUCGGCCCuugCGuc -5'
24699 3' -56.1 NC_005264.1 + 144848 0.66 0.890182
Target:  5'- cGUCA-GAGCCGGuGCCGGcuuuGAACGCGc -3'
miRNA:   3'- cUAGUgUUCGGCU-CGGCC----CUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 141483 0.66 0.890182
Target:  5'- --cCACcGGCCGAGgcggcCCGGGAcgaacggcaGCGCAa -3'
miRNA:   3'- cuaGUGuUCGGCUC-----GGCCCU---------UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 140540 0.76 0.397209
Target:  5'- uGUCugAGGCgCG-GCUGGGAugGCAGa -3'
miRNA:   3'- cUAGugUUCG-GCuCGGCCCUugCGUC- -5'
24699 3' -56.1 NC_005264.1 + 136511 0.68 0.803474
Target:  5'- aGGUCAUAgcuaGGuCCGAGaCCGGaGAcgACGCGGa -3'
miRNA:   3'- -CUAGUGU----UC-GGCUC-GGCC-CU--UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 133946 0.67 0.853726
Target:  5'- cGGUgGgAAGCUuGGCCGGGGucuuCGCGGu -3'
miRNA:   3'- -CUAgUgUUCGGcUCGGCCCUu---GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 132386 0.75 0.432048
Target:  5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3'
miRNA:   3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 130899 0.67 0.868209
Target:  5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3'
miRNA:   3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 127653 0.66 0.896811
Target:  5'- --gCGCuAGaCGGGCUGGGGACGCc- -3'
miRNA:   3'- cuaGUGuUCgGCUCGGCCCUUGCGuc -5'
24699 3' -56.1 NC_005264.1 + 124137 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 123595 1.09 0.002871
Target:  5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3'
miRNA:   3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 123522 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 122836 0.67 0.876247
Target:  5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3'
miRNA:   3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.