Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 123595 | 1.09 | 0.002871 |
Target: 5'- gGAUCACAAGCCGAGCCGGGAACGCAGg -3' miRNA: 3'- -CUAGUGUUCGGCUCGGCCCUUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 122836 | 0.67 | 0.876247 |
Target: 5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3' miRNA: 3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 19417 | 0.66 | 0.896811 |
Target: 5'- gGGagGCGAggcGCCGgguguGGCCGcGGGGCGCGGg -3' miRNA: 3'- -CUagUGUU---CGGC-----UCGGC-CCUUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 123522 | 0.66 | 0.915308 |
Target: 5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3' miRNA: 3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 62548 | 0.71 | 0.66794 |
Target: 5'- aGAUCccgguuccaGCAAGCCGAGCCcGcuGCGCGGa -3' miRNA: 3'- -CUAG---------UGUUCGGCUCGGcCcuUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 124137 | 0.71 | 0.6781 |
Target: 5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3' miRNA: 3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 160447 | 0.7 | 0.737961 |
Target: 5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3' miRNA: 3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 86468 | 0.68 | 0.79451 |
Target: 5'- --gCAgGAGCUGAGCCaGGAGCaGUGGg -3' miRNA: 3'- cuaGUgUUCGGCUCGGcCCUUG-CGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 159981 | 0.68 | 0.82093 |
Target: 5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3' miRNA: 3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 162174 | 0.67 | 0.876247 |
Target: 5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3' miRNA: 3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 28011 | 0.68 | 0.837701 |
Target: 5'- cGAUC-CAGGUCG-GUCGGGGGCGgGa -3' miRNA: 3'- -CUAGuGUUCGGCuCGGCCCUUGCgUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 157875 | 0.68 | 0.82093 |
Target: 5'- cGggCACcguGCCGAGUCGGuGACGCGu -3' miRNA: 3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 132386 | 0.75 | 0.432048 |
Target: 5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3' miRNA: 3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 130899 | 0.67 | 0.868209 |
Target: 5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3' miRNA: 3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 30100 | 0.74 | 0.497041 |
Target: 5'- aAUCGCGAGUCGAGaugCGGGcGGCGCGGc -3' miRNA: 3'- cUAGUGUUCGGCUCg--GCCC-UUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 136511 | 0.68 | 0.803474 |
Target: 5'- aGGUCAUAgcuaGGuCCGAGaCCGGaGAcgACGCGGa -3' miRNA: 3'- -CUAGUGU----UC-GGCUC-GGCC-CU--UGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 34180 | 0.67 | 0.868209 |
Target: 5'- aGUCACAgcugcuggacagcAGCCGcGGCauGGAGCGCAu -3' miRNA: 3'- cUAGUGU-------------UCGGC-UCGgcCCUUGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 144848 | 0.66 | 0.890182 |
Target: 5'- cGUCA-GAGCCGGuGCCGGcuuuGAACGCGc -3' miRNA: 3'- cUAGUgUUCGGCU-CGGCC----CUUGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 75106 | 0.72 | 0.616868 |
Target: 5'- --gCGCcggcGCCGAGCUGGG-GCGCAGu -3' miRNA: 3'- cuaGUGuu--CGGCUCGGCCCuUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 121642 | 0.7 | 0.708321 |
Target: 5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3' miRNA: 3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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