miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24699 3' -56.1 NC_005264.1 + 50654 0.66 0.909377
Target:  5'- aGUCGCGgcucugugaguAGuuaCCGAGCCGGGAGgcguuaGCAGu -3'
miRNA:   3'- cUAGUGU-----------UC---GGCUCGGCCCUUg-----CGUC- -5'
24699 3' -56.1 NC_005264.1 + 116405 0.67 0.861442
Target:  5'- --cCGCAGGCCGAcGUCG--AGCGCAGg -3'
miRNA:   3'- cuaGUGUUCGGCU-CGGCccUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 27913 0.67 0.861442
Target:  5'- aGAUC---GGCCGAGCUccuGGGGACgaGCAGu -3'
miRNA:   3'- -CUAGuguUCGGCUCGG---CCCUUG--CGUC- -5'
24699 3' -56.1 NC_005264.1 + 133946 0.67 0.853726
Target:  5'- cGGUgGgAAGCUuGGCCGGGGucuuCGCGGu -3'
miRNA:   3'- -CUAgUgUUCGGcUCGGCCCUu---GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 13359 0.75 0.432048
Target:  5'- cGUCG-GGGCCGAGCCGGGGccCGCGGc -3'
miRNA:   3'- cUAGUgUUCGGCUCGGCCCUu-GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 101345 0.71 0.637318
Target:  5'- --gCGCuAGCCGAGaCCGcGGGGCGCGu -3'
miRNA:   3'- cuaGUGuUCGGCUC-GGC-CCUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 5110 0.71 0.6781
Target:  5'- --cCugGGGgCGAGCUGGGAccuACGUAGg -3'
miRNA:   3'- cuaGugUUCgGCUCGGCCCU---UGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 97218 0.7 0.688223
Target:  5'- cGcgCGCGGGUacccaCGAGCCGcGAACGCAGc -3'
miRNA:   3'- -CuaGUGUUCG-----GCUCGGCcCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 2615 0.7 0.708321
Target:  5'- --gCGCGAGCCGAGCagGcGGGGCGgAGu -3'
miRNA:   3'- cuaGUGUUCGGCUCGg-C-CCUUGCgUC- -5'
24699 3' -56.1 NC_005264.1 + 41420 0.7 0.737961
Target:  5'- ---gGCAGGCCGGcGCCGGGcuccUGCGGg -3'
miRNA:   3'- cuagUGUUCGGCU-CGGCCCuu--GCGUC- -5'
24699 3' -56.1 NC_005264.1 + 38849 0.68 0.82093
Target:  5'- cGggCACcguGCCGAGUCGGuGACGCGu -3'
miRNA:   3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5'
24699 3' -56.1 NC_005264.1 + 87629 0.68 0.82093
Target:  5'- --gCGCAgGGCCGAugcaGCCGcguGGGGCGCGGg -3'
miRNA:   3'- cuaGUGU-UCGGCU----CGGC---CCUUGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 40954 0.68 0.82093
Target:  5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3'
miRNA:   3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5'
24699 3' -56.1 NC_005264.1 + 96525 0.68 0.829405
Target:  5'- aGAUCGCGA--UGAGUCaGGAugGCAGg -3'
miRNA:   3'- -CUAGUGUUcgGCUCGGcCCUugCGUC- -5'
24699 3' -56.1 NC_005264.1 + 24303 0.67 0.853726
Target:  5'- cGGUUACAuccacgguGCCGAGCguugaaGGGGcCGCAGu -3'
miRNA:   3'- -CUAGUGUu-------CGGCUCGg-----CCCUuGCGUC- -5'
24699 3' -56.1 NC_005264.1 + 4495 0.66 0.915308
Target:  5'- gGGUCGCGAGCgGAGgggggaCUGGGcgucCGCGGa -3'
miRNA:   3'- -CUAGUGUUCGgCUC------GGCCCuu--GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.