Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24699 | 3' | -56.1 | NC_005264.1 | + | 38849 | 0.68 | 0.82093 |
Target: 5'- cGggCACcguGCCGAGUCGGuGACGCGu -3' miRNA: 3'- -CuaGUGuu-CGGCUCGGCCcUUGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 11873 | 0.67 | 0.868209 |
Target: 5'- -cUCGCGagcucagAGCCGAGCCgcgagggccguGGGAAaaugccCGCAGa -3' miRNA: 3'- cuAGUGU-------UCGGCUCGG-----------CCCUU------GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 116405 | 0.67 | 0.861442 |
Target: 5'- --cCGCAGGCCGAcGUCG--AGCGCAGg -3' miRNA: 3'- cuaGUGUUCGGCU-CGGCccUUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 27913 | 0.67 | 0.861442 |
Target: 5'- aGAUC---GGCCGAGCUccuGGGGACgaGCAGu -3' miRNA: 3'- -CUAGuguUCGGCUCGG---CCCUUG--CGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 133946 | 0.67 | 0.853726 |
Target: 5'- cGGUgGgAAGCUuGGCCGGGGucuuCGCGGu -3' miRNA: 3'- -CUAgUgUUCGGcUCGGCCCUu---GCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 24303 | 0.67 | 0.853726 |
Target: 5'- cGGUUACAuccacgguGCCGAGCguugaaGGGGcCGCAGu -3' miRNA: 3'- -CUAGUGUu-------CGGCUCGg-----CCCUuGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 96525 | 0.68 | 0.829405 |
Target: 5'- aGAUCGCGA--UGAGUCaGGAugGCAGg -3' miRNA: 3'- -CUAGUGUUcgGCUCGGcCCUugCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 40954 | 0.68 | 0.82093 |
Target: 5'- cGAUCGCA-GCCGcAGCgGGcGAcgGCGCGa -3' miRNA: 3'- -CUAGUGUuCGGC-UCGgCC-CU--UGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 87629 | 0.68 | 0.82093 |
Target: 5'- --gCGCAgGGCCGAugcaGCCGcguGGGGCGCGGg -3' miRNA: 3'- cuaGUGU-UCGGCU----CGGC---CCUUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 43147 | 0.67 | 0.876247 |
Target: 5'- --gCACGGGUgGAGCgGGGAGgGgGGg -3' miRNA: 3'- cuaGUGUUCGgCUCGgCCCUUgCgUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 3810 | 0.67 | 0.876247 |
Target: 5'- cGGUcCGCGAGuUCGGGCCcgggcGGGGcCGCAGg -3' miRNA: 3'- -CUA-GUGUUC-GGCUCGG-----CCCUuGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 108143 | 0.67 | 0.876247 |
Target: 5'- gGAUCGgggggccguCGAGCCucGCgGGGAGCGUAa -3' miRNA: 3'- -CUAGU---------GUUCGGcuCGgCCCUUGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 50654 | 0.66 | 0.909377 |
Target: 5'- aGUCGCGgcucugugaguAGuuaCCGAGCCGGGAGgcguuaGCAGu -3' miRNA: 3'- cUAGUGU-----------UC---GGCUCGGCCCUUg-----CGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 43201 | 0.66 | 0.909377 |
Target: 5'- --aCGCGGGCCG-GCgGGGGGgGgGGg -3' miRNA: 3'- cuaGUGUUCGGCuCGgCCCUUgCgUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 145109 | 0.66 | 0.909377 |
Target: 5'- --gCAUAGGuuGcGCCGcGGcGCGCAGg -3' miRNA: 3'- cuaGUGUUCggCuCGGC-CCuUGCGUC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 145069 | 0.66 | 0.90321 |
Target: 5'- --cUAgAAGCCGGGCCGGGca-GCu- -3' miRNA: 3'- cuaGUgUUCGGCUCGGCCCuugCGuc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 20252 | 0.66 | 0.90321 |
Target: 5'- cGUCGC-GGCCG-GCauucaGGGGACGguGc -3' miRNA: 3'- cUAGUGuUCGGCuCGg----CCCUUGCguC- -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 127653 | 0.66 | 0.896811 |
Target: 5'- --gCGCuAGaCGGGCUGGGGACGCc- -3' miRNA: 3'- cuaGUGuUCgGCUCGGCCCUUGCGuc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 141483 | 0.66 | 0.890182 |
Target: 5'- --cCACcGGCCGAGgcggcCCGGGAcgaacggcaGCGCAa -3' miRNA: 3'- cuaGUGuUCGGCUC-----GGCCCU---------UGCGUc -5' |
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24699 | 3' | -56.1 | NC_005264.1 | + | 68431 | 0.67 | 0.883325 |
Target: 5'- cGAUCGCGcAGuCCGcGCCGcGGucugcGCGCGGa -3' miRNA: 3'- -CUAGUGU-UC-GGCuCGGC-CCu----UGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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