miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
247 3' -57.6 AC_000008.1 + 18364 0.74 0.110671
Target:  5'- gGGCuGGCGAcGGCGAcGGCGGCGGCGg -3'
miRNA:   3'- gUCG-CCGUUcUCGUUcUCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 19691 0.7 0.213048
Target:  5'- gGGCGGCAGugccGGGUcGGcGGCGGUGGCGa -3'
miRNA:   3'- gUCGCCGUU----CUCGuUC-UCGUCGCCGU- -5'
247 3' -57.6 AC_000008.1 + 24602 0.66 0.425439
Target:  5'- gAGCGGaCAAGcAGCu--GGCcuuGCGGCAg -3'
miRNA:   3'- gUCGCC-GUUC-UCGuucUCGu--CGCCGU- -5'
247 3' -57.6 AC_000008.1 + 26704 0.81 0.037619
Target:  5'- gCAGCGGCAgcGGcAGCAAcAGCAGCGGCc -3'
miRNA:   3'- -GUCGCCGU--UC-UCGUUcUCGUCGCCGu -5'
247 3' -57.6 AC_000008.1 + 26791 0.69 0.264467
Target:  5'- gCGGCGGCAGcAGCAGGAGgAGgagcgcugcgucUGGCGc -3'
miRNA:   3'- -GUCGCCGUUcUCGUUCUCgUC------------GCCGU- -5'
247 3' -57.6 AC_000008.1 + 30467 0.67 0.333831
Target:  5'- gCAGCGccuGCuagaAAGAcGCAGG-GCAGCGGCc -3'
miRNA:   3'- -GUCGC---CG----UUCU-CGUUCuCGUCGCCGu -5'
247 3' -57.6 AC_000008.1 + 32084 0.68 0.317333
Target:  5'- gCGGUGGCugcAGCGGcugaAGCGGCGGCGg -3'
miRNA:   3'- -GUCGCCGuucUCGUUc---UCGUCGCCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.