miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
247 5' -61.9 AC_000008.1 + 34634 0.66 0.292127
Target:  5'- aGCGCCCUCCaCCUUCagCCUcaaGCaGCGa -3'
miRNA:   3'- cCGUGGGAGG-GGAGGa-GGA---UGgCGCa -5'
247 5' -61.9 AC_000008.1 + 18311 0.66 0.270462
Target:  5'- -cCGCCCUCCCgUagaggagCCUCCaccgGCCGUGg -3'
miRNA:   3'- ccGUGGGAGGGgA-------GGAGGa---UGGCGCa -5'
247 5' -61.9 AC_000008.1 + 9954 0.67 0.257834
Target:  5'- cGGCACuucuuCUUCuCCUUCCUCUUGCCuGCa- -3'
miRNA:   3'- -CCGUG-----GGAG-GGGAGGAGGAUGG-CGca -5'
247 5' -61.9 AC_000008.1 + 18513 0.67 0.251383
Target:  5'- cGGCGCCgUa-CUUCCUCgaACCGCGc -3'
miRNA:   3'- -CCGUGGgAggGGAGGAGgaUGGCGCa -5'
247 5' -61.9 AC_000008.1 + 22711 0.67 0.244442
Target:  5'- gGGUugCCUCcaggcugCCCgugUCCUCCUGCCccaGCGc -3'
miRNA:   3'- -CCGugGGAG-------GGG---AGGAGGAUGG---CGCa -5'
247 5' -61.9 AC_000008.1 + 27283 0.68 0.199174
Target:  5'- cGGaGCCC-CCCCUaCCUCCgggggcucgcCCGCGUc -3'
miRNA:   3'- -CCgUGGGaGGGGA-GGAGGau--------GGCGCA- -5'
247 5' -61.9 AC_000008.1 + 10032 0.69 0.18399
Target:  5'- uGGCGCCCUCU--UCCUCCca-UGCGUg -3'
miRNA:   3'- -CCGUGGGAGGggAGGAGGaugGCGCA- -5'
247 5' -61.9 AC_000008.1 + 24659 0.7 0.148406
Target:  5'- cGCcagGCCCUCgCCCUCCUCCaaguccagguagUGCCGgGc -3'
miRNA:   3'- cCG---UGGGAG-GGGAGGAGG------------AUGGCgCa -5'
247 5' -61.9 AC_000008.1 + 17810 0.72 0.103757
Target:  5'- cGGUAUCCUgCCCCUCCUUauuccaCUgaucGCCGCGg -3'
miRNA:   3'- -CCGUGGGA-GGGGAGGAG------GA----UGGCGCa -5'
247 5' -61.9 AC_000008.1 + 9072 0.76 0.051105
Target:  5'- gGGCGCCagacgcagcgCUCCUCCUCCUGCUGCu- -3'
miRNA:   3'- -CCGUGGga--------GGGGAGGAGGAUGGCGca -5'
247 5' -61.9 AC_000008.1 + 11112 1.08 0.000168
Target:  5'- gGGCACCCUCCCCUCCUCCUACCGCGUc -3'
miRNA:   3'- -CCGUGGGAGGGGAGGAGGAUGGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.