miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24700 3' -56.6 NC_005264.1 + 152846 0.72 0.585086
Target:  5'- cGGGGCUcGUcgagGGCucguUGGGCUCGGCaucGCCg -3'
miRNA:   3'- -CCCCGA-CG----UCGu---ACUUGAGCCGc--UGG- -5'
24700 3' -56.6 NC_005264.1 + 68518 0.72 0.586091
Target:  5'- uGGGGUaccuUGCGGUAggcaggcuuUGucucggggucgaaauACUCGGCGACCa -3'
miRNA:   3'- -CCCCG----ACGUCGU---------ACu--------------UGAGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 30117 0.72 0.595141
Target:  5'- cGGGCggcGCGGCAccGAGCUgCGGCGcauugGCCg -3'
miRNA:   3'- cCCCGa--CGUCGUa-CUUGA-GCCGC-----UGG- -5'
24700 3' -56.6 NC_005264.1 + 86850 0.72 0.595141
Target:  5'- gGGGGCgccagcuaGCGGCGUGuggggcaauGCUuuccucacaggCGGCGGCCg -3'
miRNA:   3'- -CCCCGa-------CGUCGUACu--------UGA-----------GCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 68417 0.72 0.595141
Target:  5'- cGGGCUGCucGCucUGGACUacCGGCG-CCg -3'
miRNA:   3'- cCCCGACGu-CGu-ACUUGA--GCCGCuGG- -5'
24700 3' -56.6 NC_005264.1 + 89032 0.72 0.616334
Target:  5'- cGGGGCacucgccugUGUAGUAguacucugacgccagGAACUCGGUGGCg -3'
miRNA:   3'- -CCCCG---------ACGUCGUa--------------CUUGAGCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 139106 0.71 0.625437
Target:  5'- -cGGCUGCuGC-UGAGCggCGGCGugUg -3'
miRNA:   3'- ccCCGACGuCGuACUUGa-GCCGCugG- -5'
24700 3' -56.6 NC_005264.1 + 1574 0.71 0.635555
Target:  5'- uGGGGCUGCAGg--GAccuCUCGGUGGg- -3'
miRNA:   3'- -CCCCGACGUCguaCUu--GAGCCGCUgg -5'
24700 3' -56.6 NC_005264.1 + 79213 0.71 0.635555
Target:  5'- uGGGGCUagGCuGCGUGcaggCGGCGGCg -3'
miRNA:   3'- -CCCCGA--CGuCGUACuugaGCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 13342 0.71 0.645671
Target:  5'- aGGGGC-GCgAGgAUGAACgUCGG-GGCCg -3'
miRNA:   3'- -CCCCGaCG-UCgUACUUG-AGCCgCUGG- -5'
24700 3' -56.6 NC_005264.1 + 98816 0.71 0.645671
Target:  5'- cGGuGCUGguGCAcaaagUGcaacaaguaAGCUCGGCGAUCg -3'
miRNA:   3'- cCC-CGACguCGU-----AC---------UUGAGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 132369 0.71 0.645671
Target:  5'- aGGGGC-GCgAGgAUGAACgUCGG-GGCCg -3'
miRNA:   3'- -CCCCGaCG-UCgUACUUG-AGCCgCUGG- -5'
24700 3' -56.6 NC_005264.1 + 122006 0.71 0.655776
Target:  5'- cGGcGGCcgGCcauAGCGggaucuUGAGuCUCGGCGACCc -3'
miRNA:   3'- -CC-CCGa-CG---UCGU------ACUU-GAGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 66992 0.71 0.664855
Target:  5'- uGGGCgagcaacggcgagUGCuGCcUGGACggagCGGCGGCCu -3'
miRNA:   3'- cCCCG-------------ACGuCGuACUUGa---GCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 49349 0.71 0.665863
Target:  5'- aGGGUcGCGGU-UGGcACUCGcGCGACCg -3'
miRNA:   3'- cCCCGaCGUCGuACU-UGAGC-CGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 77220 0.71 0.665863
Target:  5'- -cGGCUGCAGCAacGGCaUCGGCGGa- -3'
miRNA:   3'- ccCCGACGUCGUacUUG-AGCCGCUgg -5'
24700 3' -56.6 NC_005264.1 + 25719 0.71 0.675923
Target:  5'- cGGGCgGCAGCgGUGcguACUCGGUcgcggagaGGCCa -3'
miRNA:   3'- cCCCGaCGUCG-UACu--UGAGCCG--------CUGG- -5'
24700 3' -56.6 NC_005264.1 + 48065 0.71 0.675923
Target:  5'- cGGGGCUGCuguuuucauAGCGcaauACUCG-CGGCCg -3'
miRNA:   3'- -CCCCGACG---------UCGUacu-UGAGCcGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 95362 0.7 0.695929
Target:  5'- cGGGGCgGCGGCccGGcCUCGGguuucacgagcUGGCCg -3'
miRNA:   3'- -CCCCGaCGUCGuaCUuGAGCC-----------GCUGG- -5'
24700 3' -56.6 NC_005264.1 + 100082 0.7 0.695929
Target:  5'- aGGGC-GUAGCAUGGcggccgcgggGCUCaGCGACg -3'
miRNA:   3'- cCCCGaCGUCGUACU----------UGAGcCGCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.