Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24700 | 3' | -56.6 | NC_005264.1 | + | 128126 | 0.66 | 0.887 |
Target: 5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3' miRNA: 3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 42263 | 0.66 | 0.887 |
Target: 5'- -uGGCUGUAGCAUGAGCUgaugaGGguuucgauuuCGGCUu -3' miRNA: 3'- ccCCGACGUCGUACUUGAg----CC----------GCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 9099 | 0.66 | 0.887 |
Target: 5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3' miRNA: 3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 4494 | 0.66 | 0.880114 |
Target: 5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3' miRNA: 3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 162725 | 0.66 | 0.880114 |
Target: 5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3' miRNA: 3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 123521 | 0.66 | 0.880114 |
Target: 5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3' miRNA: 3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 88969 | 0.66 | 0.880114 |
Target: 5'- -cGGC-GaCGGCgGUGAGCUCaGUGACCg -3' miRNA: 3'- ccCCGaC-GUCG-UACUUGAGcCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 83714 | 0.66 | 0.880114 |
Target: 5'- cGGuGGCgGCGGCuagGuACgCGGCGGCa -3' miRNA: 3'- -CC-CCGaCGUCGua-CuUGaGCCGCUGg -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 43699 | 0.66 | 0.880114 |
Target: 5'- cGGGgaGCGGgAaaagGaAACUCGaGCGGCCc -3' miRNA: 3'- cCCCgaCGUCgUa---C-UUGAGC-CGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 102751 | 0.66 | 0.880114 |
Target: 5'- uGGGCcgccgGCAGUAggcuagGGGCgggccaguUCGGUGGCCu -3' miRNA: 3'- cCCCGa----CGUCGUa-----CUUG--------AGCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 75216 | 0.66 | 0.880114 |
Target: 5'- -cGGCUGCAuCGgcccuGCgCGGCGGCCg -3' miRNA: 3'- ccCCGACGUcGUacu--UGaGCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 148171 | 0.66 | 0.880114 |
Target: 5'- uGGGCcccgGCAGCAUGGuCUCuGCcguuGCCg -3' miRNA: 3'- cCCCGa---CGUCGUACUuGAGcCGc---UGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 125573 | 0.67 | 0.873012 |
Target: 5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3' miRNA: 3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 6546 | 0.67 | 0.873012 |
Target: 5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3' miRNA: 3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 31860 | 0.67 | 0.865699 |
Target: 5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3' miRNA: 3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 117423 | 0.67 | 0.865699 |
Target: 5'- cGGGGCUGUcGCGgcgcGCagGGCG-CCg -3' miRNA: 3'- -CCCCGACGuCGUacu-UGagCCGCuGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 150886 | 0.67 | 0.865699 |
Target: 5'- uGGGC-GCgaccucgucaGGCAagUGGACUuucaccccagCGGCGACCg -3' miRNA: 3'- cCCCGaCG----------UCGU--ACUUGA----------GCCGCUGG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 16442 | 0.67 | 0.865699 |
Target: 5'- cGGGGcCUGCccgcgGGUGUGAACgUGGuCGAaCCa -3' miRNA: 3'- -CCCC-GACG-----UCGUACUUGaGCC-GCU-GG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 71311 | 0.67 | 0.858181 |
Target: 5'- --uGC-GCgAGCAUGAACUUGGCGAgUg -3' miRNA: 3'- cccCGaCG-UCGUACUUGAGCCGCUgG- -5' |
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24700 | 3' | -56.6 | NC_005264.1 | + | 68487 | 0.67 | 0.858181 |
Target: 5'- aGGcGGCUGUAGCGgucGAGCacUGcGCGAUCu -3' miRNA: 3'- -CC-CCGACGUCGUa--CUUGa-GC-CGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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