miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24700 3' -56.6 NC_005264.1 + 71311 0.67 0.858181
Target:  5'- --uGC-GCgAGCAUGAACUUGGCGAgUg -3'
miRNA:   3'- cccCGaCG-UCGUACUUGAGCCGCUgG- -5'
24700 3' -56.6 NC_005264.1 + 120124 0.67 0.856653
Target:  5'- uGGGGC-GCAGCGagcaggaggacgGAGCgccggcCGGCGAUg -3'
miRNA:   3'- -CCCCGaCGUCGUa-----------CUUGa-----GCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 17832 0.67 0.853574
Target:  5'- gGGGGCUagauccuccaucucGCGcgcgcuguucgaccGCGUGAGCaaUCGGCGGgCu -3'
miRNA:   3'- -CCCCGA--------------CGU--------------CGUACUUG--AGCCGCUgG- -5'
24700 3' -56.6 NC_005264.1 + 149447 0.67 0.850463
Target:  5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3'
miRNA:   3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5'
24700 3' -56.6 NC_005264.1 + 45466 0.67 0.850463
Target:  5'- aGGGCcGCG--AUGAACUUGGCGcACUc -3'
miRNA:   3'- cCCCGaCGUcgUACUUGAGCCGC-UGG- -5'
24700 3' -56.6 NC_005264.1 + 30420 0.67 0.850463
Target:  5'- cGGaGaGCUGCGGCGgagGAGguCUCGGgGgaGCCg -3'
miRNA:   3'- -CC-C-CGACGUCGUa--CUU--GAGCCgC--UGG- -5'
24700 3' -56.6 NC_005264.1 + 123782 0.67 0.842551
Target:  5'- gGGGGUggaccGCcGCGcGAACUCGGCcaguCCg -3'
miRNA:   3'- -CCCCGa----CGuCGUaCUUGAGCCGcu--GG- -5'
24700 3' -56.6 NC_005264.1 + 121326 0.67 0.842551
Target:  5'- uGGGGCUGCucccGCAccuuaaggaGGAgUUGGCGAgCu -3'
miRNA:   3'- -CCCCGACGu---CGUa--------CUUgAGCCGCUgG- -5'
24700 3' -56.6 NC_005264.1 + 4756 0.67 0.842551
Target:  5'- gGGGGUggaccGCcGCGcGAACUCGGCcaguCCg -3'
miRNA:   3'- -CCCCGa----CGuCGUaCUUGAGCCGcu--GG- -5'
24700 3' -56.6 NC_005264.1 + 112497 0.68 0.834453
Target:  5'- aGGGCUGCcGCA-GGACaaGGuCGACg -3'
miRNA:   3'- cCCCGACGuCGUaCUUGagCC-GCUGg -5'
24700 3' -56.6 NC_005264.1 + 66604 0.68 0.834453
Target:  5'- uGGGCUGCGccGCGUu-GC-CGGCG-CCg -3'
miRNA:   3'- cCCCGACGU--CGUAcuUGaGCCGCuGG- -5'
24700 3' -56.6 NC_005264.1 + 155457 0.68 0.826175
Target:  5'- cGGGGCcGCGaucGaagaaAUGAAaaccgCGGCGGCCg -3'
miRNA:   3'- -CCCCGaCGU---Cg----UACUUga---GCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 150797 0.68 0.826175
Target:  5'- gGGGGCgUGUggGGCAgGAGCgCaGCGACUg -3'
miRNA:   3'- -CCCCG-ACG--UCGUaCUUGaGcCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 56919 0.68 0.826175
Target:  5'- uGGGGCgGCGuacguGCGUGGcgcACggGGCGACg -3'
miRNA:   3'- -CCCCGaCGU-----CGUACU---UGagCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 33289 0.68 0.826175
Target:  5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3'
miRNA:   3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5'
24700 3' -56.6 NC_005264.1 + 152316 0.68 0.826175
Target:  5'- aGGGCgGCGccGCAcagGAcccGCUCGGCGAguaCCg -3'
miRNA:   3'- cCCCGaCGU--CGUa--CU---UGAGCCGCU---GG- -5'
24700 3' -56.6 NC_005264.1 + 21745 0.68 0.825337
Target:  5'- uGGGGCcuucgGCGGCGgccgucuUGAGCgccguaacuUUGGCGGCa -3'
miRNA:   3'- -CCCCGa----CGUCGU-------ACUUG---------AGCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 121912 0.68 0.817724
Target:  5'- cGGGGCgcggcGCGGCGgggaGGGCgaCGGCGAg- -3'
miRNA:   3'- -CCCCGa----CGUCGUa---CUUGa-GCCGCUgg -5'
24700 3' -56.6 NC_005264.1 + 3766 0.68 0.817724
Target:  5'- cGGGGC-GCuGCggGccCUUGGuCGACCg -3'
miRNA:   3'- -CCCCGaCGuCGuaCuuGAGCC-GCUGG- -5'
24700 3' -56.6 NC_005264.1 + 2886 0.68 0.817724
Target:  5'- cGGGGCgcggcGCGGCGgggaGGGCgaCGGCGAg- -3'
miRNA:   3'- -CCCCGa----CGUCGUa---CUUGa-GCCGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.