miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24700 3' -56.6 NC_005264.1 + 1186 0.69 0.782354
Target:  5'- gGGGGUacGCAGCGgaccGGGCgUCcGCGGCCa -3'
miRNA:   3'- -CCCCGa-CGUCGUa---CUUG-AGcCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 1574 0.71 0.635555
Target:  5'- uGGGGCUGCAGg--GAccuCUCGGUGGg- -3'
miRNA:   3'- -CCCCGACGUCguaCUu--GAGCCGCUgg -5'
24700 3' -56.6 NC_005264.1 + 2886 0.68 0.817724
Target:  5'- cGGGGCgcggcGCGGCGgggaGGGCgaCGGCGAg- -3'
miRNA:   3'- -CCCCGa----CGUCGUa---CUUGa-GCCGCUgg -5'
24700 3' -56.6 NC_005264.1 + 3640 0.69 0.773161
Target:  5'- gGGGGUUucugggagGCGGUuUGAGCUgggGGCGACUg -3'
miRNA:   3'- -CCCCGA--------CGUCGuACUUGAg--CCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 3674 0.66 0.91231
Target:  5'- uGGGCggccgucucgGCGGCGagacgagGAGgaCGGCGAUCg -3'
miRNA:   3'- cCCCGa---------CGUCGUa------CUUgaGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 3766 0.68 0.817724
Target:  5'- cGGGGC-GCuGCggGccCUUGGuCGACCg -3'
miRNA:   3'- -CCCCGaCGuCGuaCuuGAGCC-GCUGG- -5'
24700 3' -56.6 NC_005264.1 + 4078 0.7 0.724549
Target:  5'- cGGGGCUGUuGCAcGGGCggcgucgCGGCacgacggGGCCg -3'
miRNA:   3'- -CCCCGACGuCGUaCUUGa------GCCG-------CUGG- -5'
24700 3' -56.6 NC_005264.1 + 4282 0.66 0.893666
Target:  5'- cGGGGCgGCGGCAgaGAGCacgUCcuuaucgucccuGGCGuCCa -3'
miRNA:   3'- -CCCCGaCGUCGUa-CUUG---AG------------CCGCuGG- -5'
24700 3' -56.6 NC_005264.1 + 4494 0.66 0.880114
Target:  5'- aGGGUcGCgAGCGgaggggGGACUgGGCGuCCg -3'
miRNA:   3'- cCCCGaCG-UCGUa-----CUUGAgCCGCuGG- -5'
24700 3' -56.6 NC_005264.1 + 4756 0.67 0.842551
Target:  5'- gGGGGUggaccGCcGCGcGAACUCGGCcaguCCg -3'
miRNA:   3'- -CCCCGa----CGuCGUaCUUGAGCCGcu--GG- -5'
24700 3' -56.6 NC_005264.1 + 5289 0.72 0.565083
Target:  5'- cGGGGCgGCGGCugacccgugGGGCg-GGCGACUg -3'
miRNA:   3'- -CCCCGaCGUCGua-------CUUGagCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 5413 0.72 0.585086
Target:  5'- aGGGCguacGCGGCAUcuguCUCGGCGucGCCg -3'
miRNA:   3'- cCCCGa---CGUCGUAcuu-GAGCCGC--UGG- -5'
24700 3' -56.6 NC_005264.1 + 6360 1.15 0.001194
Target:  5'- aGGGGCUGCAGCAUGAACUCGGCGACCa -3'
miRNA:   3'- -CCCCGACGUCGUACUUGAGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 6546 0.67 0.873012
Target:  5'- gGGGGCUuCGGCAgGAGCgccucguccaCGGUGAUg -3'
miRNA:   3'- -CCCCGAcGUCGUaCUUGa---------GCCGCUGg -5'
24700 3' -56.6 NC_005264.1 + 9099 0.66 0.887
Target:  5'- uGGGGCcGaa-UAUGggUcuUCGGUGACCg -3'
miRNA:   3'- -CCCCGaCgucGUACuuG--AGCCGCUGG- -5'
24700 3' -56.6 NC_005264.1 + 13342 0.71 0.645671
Target:  5'- aGGGGC-GCgAGgAUGAACgUCGG-GGCCg -3'
miRNA:   3'- -CCCCGaCG-UCgUACUUG-AGCCgCUGG- -5'
24700 3' -56.6 NC_005264.1 + 13465 0.68 0.800337
Target:  5'- aGGGGCUcCuGCggGGACUCgGGgGACa -3'
miRNA:   3'- -CCCCGAcGuCGuaCUUGAG-CCgCUGg -5'
24700 3' -56.6 NC_005264.1 + 16442 0.67 0.865699
Target:  5'- cGGGGcCUGCccgcgGGUGUGAACgUGGuCGAaCCa -3'
miRNA:   3'- -CCCC-GACG-----UCGUACUUGaGCC-GCU-GG- -5'
24700 3' -56.6 NC_005264.1 + 16577 0.73 0.515975
Target:  5'- cGGGGCgGCGGCGcacaUG-ACUCcGGcCGACCc -3'
miRNA:   3'- -CCCCGaCGUCGU----ACuUGAG-CC-GCUGG- -5'
24700 3' -56.6 NC_005264.1 + 17832 0.67 0.853574
Target:  5'- gGGGGCUagauccuccaucucGCGcgcgcuguucgaccGCGUGAGCaaUCGGCGGgCu -3'
miRNA:   3'- -CCCCGA--------------CGU--------------CGUACUUG--AGCCGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.