miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24700 5' -57.9 NC_005264.1 + 44259 0.69 0.634804
Target:  5'- aGUGCUGUUCgGCGcGUCAcGCCGcGCg -3'
miRNA:   3'- -CACGACGAGgUGC-CGGUaCGGCuUGa -5'
24700 5' -57.9 NC_005264.1 + 101039 0.7 0.614415
Target:  5'- -gGCgaUGC-CCGCGGCCcgGUgGAGCUg -3'
miRNA:   3'- caCG--ACGaGGUGCCGGuaCGgCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 68787 0.7 0.614415
Target:  5'- uUGCUGCUCggacauagugagCACGaCCGcguUGCCGAACUg -3'
miRNA:   3'- cACGACGAG------------GUGCcGGU---ACGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 93051 0.7 0.58395
Target:  5'- cGUGCUGCUgCGCuGCCAUGCggccuccgccCGAAUUc -3'
miRNA:   3'- -CACGACGAgGUGcCGGUACG----------GCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 59857 0.7 0.58395
Target:  5'- gGUGCagGCcgCCACGGUCAUGCU-AGCUg -3'
miRNA:   3'- -CACGa-CGa-GGUGCCGGUACGGcUUGA- -5'
24700 5' -57.9 NC_005264.1 + 34345 0.7 0.5638
Target:  5'- uGUGcCUGUUCCaguaugacGCGGCCAaGCgCGAACUu -3'
miRNA:   3'- -CAC-GACGAGG--------UGCCGGUaCG-GCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 132328 0.71 0.552794
Target:  5'- cGUGgaGCUCCccggaggACGGCCGcGCgGAGCa -3'
miRNA:   3'- -CACgaCGAGG-------UGCCGGUaCGgCUUGa -5'
24700 5' -57.9 NC_005264.1 + 13301 0.71 0.552794
Target:  5'- cGUGgaGCUCCccggaggACGGCCGcGCgGAGCa -3'
miRNA:   3'- -CACgaCGAGG-------UGCCGGUaCGgCUUGa -5'
24700 5' -57.9 NC_005264.1 + 66208 0.72 0.504669
Target:  5'- gGUGC-GcCUCCGCGGCCAgcgaaggacuUGgCGAGCUg -3'
miRNA:   3'- -CACGaC-GAGGUGCCGGU----------ACgGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 59784 0.72 0.504669
Target:  5'- -gGCUG-UCCACGGCCGUGuCCGccGCg -3'
miRNA:   3'- caCGACgAGGUGCCGGUAC-GGCu-UGa -5'
24700 5' -57.9 NC_005264.1 + 102217 0.72 0.495063
Target:  5'- cUGCUGCUCCugcGCGaGCCGgcUGCCGcGGCa -3'
miRNA:   3'- cACGACGAGG---UGC-CGGU--ACGGC-UUGa -5'
24700 5' -57.9 NC_005264.1 + 126273 0.72 0.485541
Target:  5'- cGUGUUGgUCCgcggagGCGGCCAUGCCGc--- -3'
miRNA:   3'- -CACGACgAGG------UGCCGGUACGGCuuga -5'
24700 5' -57.9 NC_005264.1 + 110738 0.74 0.379087
Target:  5'- cUGCUcGCUUCGCGGCCuucGCCGAAg- -3'
miRNA:   3'- cACGA-CGAGGUGCCGGua-CGGCUUga -5'
24700 5' -57.9 NC_005264.1 + 6394 1.07 0.002389
Target:  5'- cGUGCUGCUCCACGGCCAUGCCGAACUc -3'
miRNA:   3'- -CACGACGAGGUGCCGGUACGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 125421 1.07 0.002389
Target:  5'- cGUGCUGCUCCACGGCCAUGCCGAACUc -3'
miRNA:   3'- -CACGACGAGGUGCCGGUACGGCUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.