miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24700 5' -57.9 NC_005264.1 + 6394 1.07 0.002389
Target:  5'- cGUGCUGCUCCACGGCCAUGCCGAACUc -3'
miRNA:   3'- -CACGACGAGGUGCCGGUACGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 13191 0.69 0.659254
Target:  5'- -cGCUGCgcgcggauccgucgCCGCcGCCGUcGCCGGGCUg -3'
miRNA:   3'- caCGACGa-------------GGUGcCGGUA-CGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 13301 0.71 0.552794
Target:  5'- cGUGgaGCUCCccggaggACGGCCGcGCgGAGCa -3'
miRNA:   3'- -CACgaCGAGG-------UGCCGGUaCGgCUUGa -5'
24700 5' -57.9 NC_005264.1 + 30353 0.68 0.705665
Target:  5'- -aGCUGCcCUGCGGCCAcguggcUGCCGuAAUUc -3'
miRNA:   3'- caCGACGaGGUGCCGGU------ACGGC-UUGA- -5'
24700 5' -57.9 NC_005264.1 + 34345 0.7 0.5638
Target:  5'- uGUGcCUGUUCCaguaugacGCGGCCAaGCgCGAACUu -3'
miRNA:   3'- -CAC-GACGAGG--------UGCCGGUaCG-GCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 44259 0.69 0.634804
Target:  5'- aGUGCUGUUCgGCGcGUCAcGCCGcGCg -3'
miRNA:   3'- -CACGACGAGgUGC-CGGUaCGGCuUGa -5'
24700 5' -57.9 NC_005264.1 + 52975 0.67 0.773486
Target:  5'- gGUGCUGCgaaCucaGGCgGUGCgCGAGCa -3'
miRNA:   3'- -CACGACGag-Gug-CCGgUACG-GCUUGa -5'
24700 5' -57.9 NC_005264.1 + 55348 0.67 0.754599
Target:  5'- uGUGCUGUguauuuUGGCCAUaGCCGGGCc -3'
miRNA:   3'- -CACGACGaggu--GCCGGUA-CGGCUUGa -5'
24700 5' -57.9 NC_005264.1 + 59784 0.72 0.504669
Target:  5'- -gGCUG-UCCACGGCCGUGuCCGccGCg -3'
miRNA:   3'- caCGACgAGGUGCCGGUAC-GGCu-UGa -5'
24700 5' -57.9 NC_005264.1 + 59857 0.7 0.58395
Target:  5'- gGUGCagGCcgCCACGGUCAUGCU-AGCUg -3'
miRNA:   3'- -CACGa-CGa-GGUGCCGGUACGGcUUGA- -5'
24700 5' -57.9 NC_005264.1 + 61797 0.67 0.74499
Target:  5'- -aGCaGCUCCACcgGGCCGcgggcaucGCCGGGCa -3'
miRNA:   3'- caCGaCGAGGUG--CCGGUa-------CGGCUUGa -5'
24700 5' -57.9 NC_005264.1 + 66208 0.72 0.504669
Target:  5'- gGUGC-GcCUCCGCGGCCAgcgaaggacuUGgCGAGCUg -3'
miRNA:   3'- -CACGaC-GAGGUGCCGGU----------ACgGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 68787 0.7 0.614415
Target:  5'- uUGCUGCUCggacauagugagCACGaCCGcguUGCCGAACUg -3'
miRNA:   3'- cACGACGAG------------GUGCcGGU---ACGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 70144 0.68 0.725487
Target:  5'- cGUGCuUGCUgCCGCGGCgGcGCCucACUa -3'
miRNA:   3'- -CACG-ACGA-GGUGCCGgUaCGGcuUGA- -5'
24700 5' -57.9 NC_005264.1 + 75095 0.66 0.800854
Target:  5'- -cGCUGCggCAgGcGCCGgcGCCGAGCUg -3'
miRNA:   3'- caCGACGagGUgC-CGGUa-CGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 75313 0.67 0.791871
Target:  5'- -cGCUGCagcaucugCCGCGcGCCAgUGCCGGuaACa -3'
miRNA:   3'- caCGACGa-------GGUGC-CGGU-ACGGCU--UGa -5'
24700 5' -57.9 NC_005264.1 + 78767 0.67 0.791871
Target:  5'- -cGCUGCUCCGCaugaGCCAgggGgCGGugUg -3'
miRNA:   3'- caCGACGAGGUGc---CGGUa--CgGCUugA- -5'
24700 5' -57.9 NC_005264.1 + 80480 0.67 0.773486
Target:  5'- aGUGCUccGCUUCGCcGCCAagGCCGAgaGCg -3'
miRNA:   3'- -CACGA--CGAGGUGcCGGUa-CGGCU--UGa -5'
24700 5' -57.9 NC_005264.1 + 83867 0.67 0.773486
Target:  5'- -cGUaggGCU---CGGCCGUGCCGAACUu -3'
miRNA:   3'- caCGa--CGAgguGCCGGUACGGCUUGA- -5'
24700 5' -57.9 NC_005264.1 + 86143 0.67 0.791871
Target:  5'- uUGCgccgcGCUCCGC-GCCAaGCUGGGCa -3'
miRNA:   3'- cACGa----CGAGGUGcCGGUaCGGCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.